PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00119.1.g00720.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 234aa    MW: 25060.3 Da    PI: 10.6282
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00119.1.g00720.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.88.3e-1180126252
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                                   +++GV+ +   grW+ e r       + r++lg+f t+e+A++ ++a+  +
  Zjn_sc00119.1.g00720.1.sm.mk  80 RFRGVYARQ-PGRWATEFRSH---RLKVRHWLGTFATEEQAKATYDAFEAR 126
                                   69***9887.9******5553...245********************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-1280123IPR001471AP2/ERF domain
PROSITE profilePS5103212.97180139IPR001471AP2/ERF domain
PfamPF008471.4E-780124IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-980129IPR016177DNA-binding domain
SMARTSM003807.0E-480130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDARSIRISF TDPDATDSDS GDDASCRTAR SKQKATRKTS IVIFVAGPGF GSKAQMTGST  60
VPRGTKCGAR TAKRAAPKQR FRGVYARQPG RWATEFRSHR LKVRHWLGTF ATEEQAKATY  120
DAFEARFLSS QPGGVLQPAP KHAGDGGSGR DVHRPLHPPD ENMQQIALAL KAAMTAAMKS  180
SAEPRSSVAS APSISTLPMA SPPSSAAEKD GIGSHTCDGR AEPAICLHLF LFHW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974648.15e-47dehydration-responsive element-binding protein 1E
TrEMBLK3YM521e-45K3YM52_SETIT; Uncharacterized protein
STRINGSi015330m2e-46(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140032023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.17e-11ERF family protein