PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00122.1.g00290.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 415aa    MW: 45805.3 Da    PI: 9.5819
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00122.1.g00290.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.6e-17118165148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++lv ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Zjn_sc00122.1.g00290.1.am.mk 118 KGAWTKEEDDRLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 165
                                   79******************************99************97 PP
2Myb_DNA-binding56.47e-18171215147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg++T+eEdel+++++ + G++ W++Ia +++ gRt++++k++w+++
  Zjn_sc00122.1.g00290.1.am.mk 171 RGNFTEEEDELIIKLHSLVGNK-WSLIAGRLP-GRTDNEIKNYWNTH 215
                                   89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-23109168IPR009057Homeodomain-like
PROSITE profilePS5129416.58113165IPR017930Myb domain
SMARTSM007171.9E-13117167IPR001005SANT/Myb domain
SuperFamilySSF466892.43E-29117212IPR009057Homeodomain-like
PfamPF002499.5E-15118165IPR001005SANT/Myb domain
CDDcd001671.15E-10120165No hitNo description
PROSITE profilePS5129428.982166220IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-27169220IPR009057Homeodomain-like
SMARTSM007171.7E-17170218IPR001005SANT/Myb domain
PfamPF002493.3E-16171215IPR001005SANT/Myb domain
CDDcd001675.22E-13173216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEWSSHTQLA RASLAYLTSH LPEVPFHGRG PLSPLGDLPI QSSAYKIQRR FTHRSLASQQ  60
HQQQQPALPC PALPCSAAQS TESPGKESGG KRKPRKHHHR PCIVMGRSPC CEKAHTNKGA  120
WTKEEDDRLV AYIKAHGEGC WRSLPKAAGL LRCGKSCRLR WINYLRPDLK RGNFTEEEDE  180
LIIKLHSLVG NKWSLIAGRL PGRTDNEIKN YWNTHIRRKL LSRGIDPVTH RPINEHASNI  240
TISFEAARDD KGAVFRREEQ KVAAAISRHE PPSHGDWGQG KPHKCPDLNL DLCISPPCQD  300
EPMKPVKREA GLCFSCSLGL PKSTDCKCSN FLGLRTAMLD FRSSCFGRVP RAQLGGRCSL  360
AAMNAIGGGS VSRLGGFGEL GRREGIAIGD AAGCCRSVVC DGKRGRDVEA TPQER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-281182207108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794100.0HF679410.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB4 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803176.11e-154myb-related protein Hv1-like
SwissprotP200261e-136MYB1_HORVU; Myb-related protein Hv1
TrEMBLA0A0A9D5311e-154A0A0A9D531_ARUDO; Myb31
STRINGPavir.Ba01213.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-96myb domain protein 4