PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00122.1.g00870.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 325aa    MW: 36183.8 Da    PI: 11.1027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00122.1.g00870.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.3e-15196246255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+++AeIr p     k +r++l +++ta e a+a+++a+ +l+g
  Zjn_sc00122.1.g00870.1.am.mk 196 RYRGVRQRP-WGKYAAEIRYP---ArKGARVWLSTYDTAVEVARAYDRAAFRLRG 246
                                   7********.**********8...4445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-10196246IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-19196255IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-28196255IPR001471AP2/ERF domain
CDDcd000186.87E-25196255No hitNo description
SMARTSM003802.7E-30196260IPR001471AP2/ERF domain
PROSITE profilePS5103222.8196254IPR001471AP2/ERF domain
PRINTSPR003671.0E-13197208IPR001471AP2/ERF domain
PRINTSPR003671.0E-13236256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTRINRPKLG CTKGLSMEFG KSKITISSDP SFARRGSQAT NAVPVRLVVP QKETVATVIH  60
RIARGLWCFR PAVDFDPVPQ LESLLGSRGR LDKLAEARLA SRRELGISMP FRLLHRRRLF  120
AGKGIEYPLS CAAAVPVGWC VGLDRPRPIG TARKRRWAAY FPVLRPVTPG QHAQGAAQAR  180
QQQLEQCGYA EDDFRRYRGV RQRPWGKYAA EIRYPARKGA RVWLSTYDTA VEVARAYDRA  240
AFRLRGSKAI LNFPNEVAFG AAVRWAPSAA PLTNSYAAAG NKRTRLPEPS LLWETAECLR  300
EVKKERVHEP AASCDYSAAS VAMVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-25195260469ATERF1
3gcc_A9e-25195260469ATERF1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798903e-86AC079890.13 Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence.
GenBankAC0847633e-86AC084763.4 Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence.
GenBankAP0149663e-86AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankAY3418263e-86AY341826.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP28 mRNA, complete cds.
GenBankCP0126183e-86CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-30ERF family protein