PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00122.1.g01090.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 2221aa MW: 236214 Da PI: 8.7741

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00122.1.g01090.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.6	2.2e-34	368	459	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k+y++++d++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+ Zjn_sc00122.1.g01090.1.am.mk 368 FLTKTYQLVDDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFA 439 9***************************************************************99......... PP ESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkks 102 ++ F++g+k+ll++i+r+k Zjn_sc00122.1.g01090.1.am.mk 440 NDCFRRGEKRLLCDIHRRKV 459 ***************985 PP
2	Homeobox	63.2	3.8e-20	1385	1440	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+k+l+L+ +qVk+WFqNrR+++k Zjn_sc00122.1.g01090.1.am.mk 1385 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSKRLNLEIQQVKFWFQNRRTQMK 1440 688999***********************************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	7.1E-37	361	452	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.6E-59	364	457	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.02E-33	365	457	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	8.5E-31	368	457	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-18	368	391	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-18	406	418	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	407	431	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-18	419	431	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46689	5.01E-21	1368	1442	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.4E-22	1372	1442	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.864	1382	1442	IPR001356	Homeobox domain
SMART	SM00389	1.6E-19	1383	1446	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-17	1385	1440	IPR001356	Homeobox domain
CDD	cd00086	8.16E-19	1385	1442	No hit	No description
PROSITE pattern	PS00027	0	1417	1440	IPR017970	Homeobox, conserved site
SMART	SM00234	6.9E-16	1583	1821	IPR002913	START domain
Pfam	PF01852	3.0E-27	1590	1766	IPR002913	START domain
SuperFamily	SSF55961	7.87E-18	1591	1766	No hit	No description
CDD	cd08875	7.56E-77	1591	1943	No hit	No description
PROSITE profile	PS50848	26.025	1591	1947	IPR002913	START domain
Pfam	PF01852	7.0E-7	1901	1943	IPR002913	START domain
SuperFamily	SSF55961	2.33E-13	1963	2189	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2221 aa Download sequence Send to blast
MDSLFDPFGR RNSNLDALLC STDSILDILA HGVRAAVSGH LPLGEALDST VDTMCGTLEL 60 RPSLRADLAW SLRPTPARVA LASGVAGVGS LRDTLAAGAG SALRAGACGL LAALADGSIR 120 VFNFCFNPNP KDQRSAGRFH GSLAASCHLN TRGVPGIREP PSSMDWNRHH YLLYFDRKTY 180 GCSVKKAVQR KNLIAPRTRY PMIDTCPVHP GPCPRVPEPS RRKQPREKVT EPSRSSSAHH 240 EANHTEPNRT LPPITAVHVP MELNPTPEDR AAGGYQCGRA HSARAVFVAV RFTHRIGNLR 300 LPYLPLPTRG GIPPHLEASP QIQPGGGGGR MAEQGAAAAE ASASEPPPPA PVPSPAEAVG 360 QRTLPTPFLT KTYQLVDDPA VDDVISWNED GSTFVVWRPA EFARDLLPKY FKHNNFSSFV 420 RQLNTYGFRK IVPDRWEFAN DCFRRGEKRL LCDIHRRKVA PAAGLATAAA AAASGAVTVA 480 AAPIPMALPV TLPGSPGLSS DEQVLSSNSG SAEDHPHAPS GSGGGASGSA SSDMGEENER 540 LRRENARLTR ELGQMKKLCN NIVLLMSKYA ASQQLDASAA LSSVVNNSGE SSEALPQLPP 600 LPPALLELMP SCPAALATAA AGLAAEPDAA ARLFGVSIGL KRTREEDSGD GEEPADHGRG 660 SGEAKPEVSD AQQHPAAHPG SKETTPSSPD QHRWPIYRPT PVYHSTRVCN GQDPGPGSDQ 720 DGSSSRSVAP HPPYLSSCAR VGVLPYLCSF ARRRRSIDYA VLTALSWRSR ITSLEVTVVS 780 GESVLLRSGR TLSRGAHTVV RTVSSSAVTH VNADADCGGY PRWNETLRVE LPAGARGIDV 840 EICRTNGGRA GEPVAATRVP VADFSVGPPG HLHCLSYRLY DAGGAQGRNG IVNITVKRLG 900 GEGRKASLQV PGMGKAVDAG ASSCYSVGDQ GTVPASGVAI GYPVGVDFSA TRRADAGDKG 960 CSRISGQLLE CLLHVIGSYV SLATACTRFQ SSQPYPPLTR LRRVHDDGTG WRGAFALFRQ 1020 RAGLMRLRTP RRALKVATES GRSWLASCSS RPIIHQSVYV HCRSAGMRSA TTHFARDEST 1080 RPSRAFGLGW VARRVGRHGT GAAAWLRWVG AVRQYPCLLL RSHGTTSVLR QTPAKPPPLP 1140 RTTCRTFRRS LSPVPRAFVP PVRSRCRGRF SCLQTSFLHL PLRFAVVLAL LHTGRRCWSP 1200 VKLICHCQIC DGVKVSNRAA AAGIPRPRPM QACSGTLHPS GGGQDPFDSR RPSSGSAPLF 1260 SMSFGGGMFD GAGAGVFSYD ASGGGAGTHN PGLLSAAPPV AEHGAGWFAS PGLSLGLQTN 1320 MDGGQLGDVS RLGLMGSGGN GSVGDGDSMG RGREDENDSR SGSDNLDGAS GDELDPDNSN 1380 PRKKKKRYHR HTPQQIQELE AVFKECPHPD EKQRMELSKR LNLEIQQVKF WFQNRRTQMK 1440 TQIERHENAL LRQENDKLRA DNMTIREAVR NPTCGTCGGA AVLGEVSLEE QHLRIENARL 1500 KDELDRVCAI AGKFLGRPVS FGSPVSSLQG CSGLELGVGA NGFGLGLLGA SSLPPIPDLM 1560 GSSSALRLPA GIGGLDGAMH GGAADGVDRA ELVKLSQMDA PLWLPGPDGS GFDTLNLDEY 1620 HRALDGYVSE ATREAGVVIS SSVDLVDSLM DASRWSEMFP CIVARASTTD IISSGMGGTR 1680 SGSIQLMHAE LQVLSPLVPI REMVFLRFCK QDADGVWAVV DVSVDAILRP DGHHHSQHNG 1740 GAAGYMGCRL LPSGCIVQDM NNGYSKGAHS SALVRVAVCC ASSFVCVVSL VGRGYVNPWS 1800 APSELRAAPA PRRACDNNVF GACAPHHLSR CGMPYAVDRS RRTPLAASLL PPSRVRLPAA 1860 SRAAPDLLHL LPPLPPCPRP GARQVAVATA VTAAHGIWGL RVTWVVHAEY DEVAMHQLYR 1920 PLLRSGQALG ARRWLASLQR QCEYFAILAS NSLPARDHAA ITPVGRRSML KLAQRMTDNF 1980 CAGVCASAAQ KWRRLDEWRG DEGGSAAGAG DGEEKVRMMA RQSVGGPGEP PGVVLSATTS 2040 VRLQATSPQR VFDYLRDEQR RGEWDVLANG EAMQEMDHIA KGQHHGNAVS LLRPNATSGN 2100 QNNMLILQET CTDSSGSLVV YAPVDVQSMH VVMNGGDSAY VSLLPSGFAI LPDCHGPPSS 2160 NPAEGSPSGS PGSLVTVAFQ ILVNSLPTAR LAVESVDTVS SLLSCTVQKI KAALQASVVS 2220 P

Sequence ? help Back to Top

Protein Sequence Length: 2221 aa Download sequence Send to blast

MDSLFDPFGR RNSNLDALLC STDSILDILA HGVRAAVSGH LPLGEALDST VDTMCGTLEL  60
RPSLRADLAW SLRPTPARVA LASGVAGVGS LRDTLAAGAG SALRAGACGL LAALADGSIR  120
VFNFCFNPNP KDQRSAGRFH GSLAASCHLN TRGVPGIREP PSSMDWNRHH YLLYFDRKTY  180
GCSVKKAVQR KNLIAPRTRY PMIDTCPVHP GPCPRVPEPS RRKQPREKVT EPSRSSSAHH  240
EANHTEPNRT LPPITAVHVP MELNPTPEDR AAGGYQCGRA HSARAVFVAV RFTHRIGNLR  300
LPYLPLPTRG GIPPHLEASP QIQPGGGGGR MAEQGAAAAE ASASEPPPPA PVPSPAEAVG  360
QRTLPTPFLT KTYQLVDDPA VDDVISWNED GSTFVVWRPA EFARDLLPKY FKHNNFSSFV  420
RQLNTYGFRK IVPDRWEFAN DCFRRGEKRL LCDIHRRKVA PAAGLATAAA AAASGAVTVA  480
AAPIPMALPV TLPGSPGLSS DEQVLSSNSG SAEDHPHAPS GSGGGASGSA SSDMGEENER  540
LRRENARLTR ELGQMKKLCN NIVLLMSKYA ASQQLDASAA LSSVVNNSGE SSEALPQLPP  600
LPPALLELMP SCPAALATAA AGLAAEPDAA ARLFGVSIGL KRTREEDSGD GEEPADHGRG  660
SGEAKPEVSD AQQHPAAHPG SKETTPSSPD QHRWPIYRPT PVYHSTRVCN GQDPGPGSDQ  720
DGSSSRSVAP HPPYLSSCAR VGVLPYLCSF ARRRRSIDYA VLTALSWRSR ITSLEVTVVS  780
GESVLLRSGR TLSRGAHTVV RTVSSSAVTH VNADADCGGY PRWNETLRVE LPAGARGIDV  840
EICRTNGGRA GEPVAATRVP VADFSVGPPG HLHCLSYRLY DAGGAQGRNG IVNITVKRLG  900
GEGRKASLQV PGMGKAVDAG ASSCYSVGDQ GTVPASGVAI GYPVGVDFSA TRRADAGDKG  960
CSRISGQLLE CLLHVIGSYV SLATACTRFQ SSQPYPPLTR LRRVHDDGTG WRGAFALFRQ  1020
RAGLMRLRTP RRALKVATES GRSWLASCSS RPIIHQSVYV HCRSAGMRSA TTHFARDEST  1080
RPSRAFGLGW VARRVGRHGT GAAAWLRWVG AVRQYPCLLL RSHGTTSVLR QTPAKPPPLP  1140
RTTCRTFRRS LSPVPRAFVP PVRSRCRGRF SCLQTSFLHL PLRFAVVLAL LHTGRRCWSP  1200
VKLICHCQIC DGVKVSNRAA AAGIPRPRPM QACSGTLHPS GGGQDPFDSR RPSSGSAPLF  1260
SMSFGGGMFD GAGAGVFSYD ASGGGAGTHN PGLLSAAPPV AEHGAGWFAS PGLSLGLQTN  1320
MDGGQLGDVS RLGLMGSGGN GSVGDGDSMG RGREDENDSR SGSDNLDGAS GDELDPDNSN  1380
PRKKKKRYHR HTPQQIQELE AVFKECPHPD EKQRMELSKR LNLEIQQVKF WFQNRRTQMK  1440
TQIERHENAL LRQENDKLRA DNMTIREAVR NPTCGTCGGA AVLGEVSLEE QHLRIENARL  1500
KDELDRVCAI AGKFLGRPVS FGSPVSSLQG CSGLELGVGA NGFGLGLLGA SSLPPIPDLM  1560
GSSSALRLPA GIGGLDGAMH GGAADGVDRA ELVKLSQMDA PLWLPGPDGS GFDTLNLDEY  1620
HRALDGYVSE ATREAGVVIS SSVDLVDSLM DASRWSEMFP CIVARASTTD IISSGMGGTR  1680
SGSIQLMHAE LQVLSPLVPI REMVFLRFCK QDADGVWAVV DVSVDAILRP DGHHHSQHNG  1740
GAAGYMGCRL LPSGCIVQDM NNGYSKGAHS SALVRVAVCC ASSFVCVVSL VGRGYVNPWS  1800
APSELRAAPA PRRACDNNVF GACAPHHLSR CGMPYAVDRS RRTPLAASLL PPSRVRLPAA  1860
SRAAPDLLHL LPPLPPCPRP GARQVAVATA VTAAHGIWGL RVTWVVHAEY DEVAMHQLYR  1920
PLLRSGQALG ARRWLASLQR QCEYFAILAS NSLPARDHAA ITPVGRRSML KLAQRMTDNF  1980
CAGVCASAAQ KWRRLDEWRG DEGGSAAGAG DGEEKVRMMA RQSVGGPGEP PGVVLSATTS  2040
VRLQATSPQR VFDYLRDEQR RGEWDVLANG EAMQEMDHIA KGQHHGNAVS LLRPNATSGN  2100
QNNMLILQET CTDSSGSLVV YAPVDVQSMH VVMNGGDSAY VSLLPSGFAI LPDCHGPPSS  2160
NPAEGSPSGS PGSLVTVAFQ ILVNSLPTAR LAVESVDTVS SLLSCTVQKI KAALQASVVS  2220
P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdg_A	3e-25	368	457	10	110	Heat shock factor protein 1
5hdn_A	3e-25	368	457	10	110	Heat shock factor protein 1
5hdn_B	3e-25	368	457	10	110	Heat shock factor protein 1
5hdn_C	3e-25	368	457	10	110	Heat shock factor protein 1
5hdn_D	3e-25	368	457	10	110	Heat shock factor protein 1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1381	1386	RKKKKR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ250985	0.0	AJ250985.1 Zea mays mRNA for OCL3 protein (ocl3 gene).

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	1e-138	HD-ZIP family protein