PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00122.1.g01250.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 222aa    MW: 23961.7 Da    PI: 10.4187
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00122.1.g01250.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.6e-201666256
                           AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                                  ++ GVr+++ +grWvAeI+d      +r r +lg+f+taeeAa+a+++a+++l+ge
  Zjn_sc00122.1.g01250.1.sm.mk 16 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEEAARAYDEAARALRGE 66
                                  589******.7*********....4456**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.16E-291674No hitNo description
PfamPF008479.5E-151666IPR001471AP2/ERF domain
PROSITE profilePS5103220.5081673IPR001471AP2/ERF domain
SMARTSM003804.8E-331679IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-281674IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-201774IPR016177DNA-binding domain
PRINTSPR003673.0E-81728IPR001471AP2/ERF domain
PRINTSPR003673.0E-83955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAAQESGRTA ASRARRFVGV RQRPSGRWVA EIKDSAQRVR LWLGTFDTAE EAARAYDEAA  60
RALRGENTRT NFADRGRHGG SAASRARLSK NLQHVIARAA AAGRATACAG VGDQFALAAV  120
FRHNWLQPNN TPHTPQQQQQ CDAETAPHVK SAVQPSFVVP RRTEAPQPPS QTAAVPVGDI  180
VDGDVSVEMG VQERSFKVSS SVITPPTFSA SSPEPFVLED FF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-15572371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8102821e-63DQ810282.1 Oryza brachyantha BAC 0002C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239429.15e-74dehydration-responsive element-binding protein 1C
TrEMBLA0A3B6LP971e-73A0A3B6LP97_WHEAT; Uncharacterized protein
TrEMBLA0A446UGS51e-73A0A446UGS5_TRITD; Uncharacterized protein
STRINGGRMZM2G018138_P016e-68(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124292634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-19related to AP2 11