PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00128.1.g00580.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 201aa    MW: 22639.9 Da    PI: 6.0176
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00128.1.g00580.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-093252346
                                  -HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                                  +W++Ia++++ gRt++++k++w++
  Zjn_sc00128.1.g00580.1.sm.mk  3 RWSRIAQHLP-GRTDNEIKNYWRT 25
                                  4*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.55131IPR017930Myb domain
SuperFamilySSF466894.52E-7333IPR009057Homeodomain-like
CDDcd001675.15E-7325No hitNo description
Gene3DG3DSA:1.10.10.604.6E-11326IPR009057Homeodomain-like
PfamPF002493.6E-7325IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MYRWSRIAQH LPGRTDNEIK NYWRTRVQKH AKQLNCDANS QRFKDAMRYL WTPRLVDSHR  60
FLNTNAAGSD HQDDGYYLTA ALSGVGVTYP SSDSLVTTTS EPHDASFPAR KWGELYSYAD  120
VRAGEETMAV SSGDWCAARE TSQQQAPGMM RAGEQKAAQA VRGAGARFED PELSGWVQSF  180
SEVVDATESS FWTLDDVWKT Q
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0697442e-58BT069744.1 Zea mays full-length cDNA clone ZM_BFb0226N11 mRNA, complete cds.
GenBankKJ7276382e-58KJ727638.1 Zea mays clone pUT5565 MYB transcription factor (MYB100) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962755.16e-49transcription factor JAMYB
TrEMBLK3Z8G11e-47K3Z8G1_SETIT; Uncharacterized protein
STRINGPavir.Cb00499.1.p2e-48(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.19e-30myb domain protein 78