PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00128.1.g00590.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 198aa MW: 21894.6 Da PI: 9.3816

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00128.1.g00590.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.4	1.6e-08	50	77	1	28
TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIa 28 rg+WT +Ed+ lv++++ +G g+W++ a Zjn_sc00128.1.g00590.1.am.mk 50 RGPWTVDEDLALVNYITDHGEGRWNSLA 77 89***********************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-9	44	78	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.329	45	77	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.72E-6	47	81	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-5	50	77	IPR001005	SANT/Myb domain
CDD	cd00167	5.80E-5	52	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MASSSQSSRS RTCTPAATTD AALARCPVVP FDDERNEGAH DKEERAELRR GPWTVDEDLA 60 LVNYITDHGE GRWNSLAPAA GHHPLFSLSY LHARRAKPAG PFADIVNREH ICRAEAYGQE 120 LPAAVAELPP AGREARRLHR RRAPAHPRPS LPLRQPVIRH PNPTVDHTQQ NYQSLSLLCC 180 ASRFRRLAAG RPRAAATD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK360551	3e-45	AK360551.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1120I18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A287QME0	6e-34	A0A287QME0_HORVV; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP27133	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40350.1	1e-13	myb domain protein 24