PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00128.1.g00740.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 218aa MW: 25327.7 Da PI: 8.2146

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00128.1.g00740.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.4e-18	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Zjn_sc00128.1.g00740.1.am.mkhc 30 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 77 79********************************************97 PP
2	Myb_DNA-binding	56.1	8.8e-18	83	128	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ Zjn_sc00128.1.g00740.1.am.mkhc 83 RGRMTPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 128 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.259	25	77	IPR017930	Myb domain
SuperFamily	SSF46689	1.62E-29	29	124	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-15	29	79	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-16	30	77	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-20	31	84	IPR009057	Homeodomain-like
CDD	cd00167	3.03E-11	32	77	No hit	No description
PROSITE profile	PS51294	25.994	78	132	IPR017930	Myb domain
SMART	SM00717	1.1E-16	82	130	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-15	83	127	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-24	85	131	IPR009057	Homeodomain-like
CDD	cd00167	7.52E-12	85	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
HAEEEEQEDR LLADTRVYVA MVTVREETRK GPWTEQEDLQ LVCTVRLFGE RRWDFIAKVS 60 GLNRTGKSCR LRWVNYLHPG LKRGRMTPHE ERLILELHAR WGNRWSRIAR RLPGRTDNEI 120 KNYWRTHMRK KAQERKRNMS PSSSSSSLTY QSCYPDTPPI IGAEGQELHG GSGCITSILK 180 GTPPDMEVYP LDQFWLEMDD EIKMAQQFGY GEGAGPCF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-28	27	132	1	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-28	30	132	4	105	C-Myb DNA-Binding Domain
1msf_C	2e-28	30	132	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF756668	1e-171	JF756668.1 Saccharum hybrid cultivar Co 740 MYB transcription factor MYB14 (MYB14) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004962720.1	1e-125	myb-related protein MYBAS2
Swissprot	Q4JL76	1e-109	MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBL	K3Z983	1e-123	K3Z983_SETIT; Uncharacterized protein
STRING	Si023104m	1e-124	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP636	37	169

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	3e-72	myb domain protein 59

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]