PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00132.1.g00100.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 739aa    MW: 80115.5 Da    PI: 10.1141
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00132.1.g00100.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-096626972055
                                   HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Zjn_sc00132.1.g00100.1.am.mk 662 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 697
                                   4679*****************************885 PP
2ELK36.69.6e-13617638122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELK qLl+KYsgyL+sL+qEFs
  Zjn_sc00132.1.g00100.1.am.mk 617 ELKYQLLKKYSGYLSSLRQEFS 638
                                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.5E-22398442IPR005540KNOX1
PfamPF037901.2E-21399440IPR005540KNOX1
SMARTSM012565.4E-28445497IPR005541KNOX2
PfamPF037912.0E-21451495IPR005541KNOX2
SMARTSM011881.2E-7617638IPR005539ELK domain
PfamPF037891.0E-9617638IPR005539ELK domain
PROSITE profilePS5121311.627617637IPR005539ELK domain
PROSITE profilePS5007112.892637700IPR001356Homeobox domain
SuperFamilySSF466893.51E-19638712IPR009057Homeodomain-like
SMARTSM003894.4E-13639704IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-27642701IPR009057Homeodomain-like
CDDcd000864.44E-12649701No hitNo description
PfamPF059202.6E-16657696IPR008422Homeobox KN domain
PROSITE patternPS000270675698IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MGRAVLARDD DGRHGLRGGL SSQTGGSQTA VDPAFPRQRH DGRLQRGSGM SIRRRTRAIR  60
GDGRRGASAV HRSELGFRSF LATTQLYQHR GGSETDGGKV KETATRDHSI VRVVTIQQVP  120
VSSKELRTCP VVADAWSSKW NACDCHASIA VRAKTFGRTA PLAASRTCKY SCRSVKYTVS  180
TDMEVWYDRM SERSHGKAHR MQLKDDCRTV PFEPGPLEMH AGDVSPEPGQ TNLVPTQPVR  240
FDARKGIATS HRRPHLSLPL VPHPSVPPSS INISPPPSLS PRPLPAALLS TAAPPLLVPR  300
GERGAAVSSR HGGASSSFGN LGAGRSSSGG GGGGSNSKPA ASSSFLQLPL SSAAAAPAGV  360
AYYGAPLALL HQGQATGLSS SSQSQYGRHA EISPAEADAI KAKIVSHPQY SALLAAYLDC  420
QKVGAPPDVL EKLTAVAGKL DARPPNRHEP RDPELDQFMQ EAYCNMLVKY REELTRPIDE  480
AMEFLKRVEA QLDSISGGAA AAGSSRLSLA GKTLLQLRPS LASPSSLLVY GRTALGLPHW  540
ETVVLDSGSG FRGWQGNPSV SSVARVFRGA LPGFLNAGRV STVHGKSEGV GSSEDDMDTT  600
GRENETSEID PRAEDKELKY QLLKKYSGYL SSLRQEFSKK KKKGKLPKEA RQKLLHWWEL  660
HYKWPYPSET EKIALAESTG LDQKQINNWF INQRKRHWKP SEDMPFVMME GFHPQTAAAL  720
YMDGPFLADG MYRLGSRME
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0940391e-170FP094039.1 Phyllostachys edulis cDNA clone: bphyem209e11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307878.11e-163homeobox protein rough sheath 1 isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6753722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-53KNOTTED-like from Arabidopsis thaliana