PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00132.1.g00460.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 339aa    MW: 38526.1 Da    PI: 10.8357
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00132.1.g00460.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.43.4e-32138188151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krienk+nrqvtfskRrng+lKKA+E+SvLCdaevavi+fs++gklyey++
  Zjn_sc00132.1.g00460.1.am.mk 138 KRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAT 188
                                   79***********************************************86 PP
2K-box56.11.6e-191892543497
                         K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq..eenkaLrkk 97 
                                     Rhl+GedLesL+lkeLqqLeqqLe+slk+iRs+K++ l e+ + lqk   e q   ++++L+++
  Zjn_sc00132.1.g00460.1.am.mk 189 DSRHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKERSLQEENKALQKELVERQkmARQQQLQQQ 254
                                   57**********************************************975444400455566655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-43130189IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.095130190IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-30131206IPR002100Transcription factor, MADS-box
CDDcd002656.20E-39131190No hitNo description
PROSITE patternPS003500132186IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-31132152IPR002100Transcription factor, MADS-box
PfamPF003193.1E-27139186IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-31152167IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-31167188IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.471169257IPR002487Transcription factor, K-box
PfamPF014862.5E-14187254IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MVHGFRRTAI LLPLDWLFAP PQEQGQGHER IFSLPSHIVN LALTVDIIVK ARRCTPFIKQ  60
GRSAVELQLH DPRRRLRHLP IASPNRSSTA STTPWKPRDS LRLPPHASST PPRGDRSLFF  120
SNLSQETRAM GRGKVQLKRI ENKINRQVTF SKRRNGLLKK AHEISVLCDA EVAVIVFSPK  180
GKLYEYATDS RHLMGEDLES LNLKELQQLE QQLESSLKHI RSRKERSLQE ENKALQKELV  240
ERQKMARQQQ LQQQQQVQWD QHTQTPAQAQ TSFSSSSFLM RQDQHALPPP SNICYPPVTM  300
GERGEEVVAA AAALQAQGQA QAQLRVGNLP PWMLSHLNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A1e-17131188158Myocyte-specific enhancer factor 2A
3mu6_B1e-17131188158Myocyte-specific enhancer factor 2A
3mu6_C1e-17131188158Myocyte-specific enhancer factor 2A
3mu6_D1e-17131188158Myocyte-specific enhancer factor 2A
5f28_A2e-17130188159MEF2C
5f28_B2e-17130188159MEF2C
5f28_C2e-17130188159MEF2C
5f28_D2e-17130188159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9630617e-75EU963061.1 Zea mays clone 257029 MADS-box transcription factor 15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105333.21e-82zea apetala homolog 1
SwissprotQ6Q9I24e-74MAD15_ORYSJ; MADS-box transcription factor 15
TrEMBLA0A3L6G3F03e-88A0A3L6G3F0_MAIZE; MADS-box transcription factor 15
TrEMBLB6TDJ63e-88B6TDJ6_MAIZE; MADS-box transcription factor 15
TrEMBLQ418293e-88Q41829_MAIZE; MADS box protein
STRINGOB07G10630.11e-74(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.14e-33AGAMOUS-like 8
Publications ? help Back to Top
  1. Cai Q, et al.
    [PAEs in composts of municipal sludge and rice straw].
    Ying Yong Sheng Tai Xue Bao, 2003. 14(11): p. 1993-6
    [PMID:14997664]
  2. Wang K, et al.
    DEP and AFO regulate reproductive habit in rice.
    PLoS Genet., 2010. 6(1): p. e1000818
    [PMID:20107517]
  3. Kobayashi K, et al.
    Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
    Plant Cell, 2012. 24(5): p. 1848-59
    [PMID:22570445]
  4. Ramanujam R,Yishi X,Liu H,Naqvi NI
    Structure-function analysis of Rgs1 in Magnaporthe oryzae: role of DEP domains in subcellular targeting.
    PLoS ONE, 2012. 7(7): p. e41084
    [PMID:22927898]
  5. Ang TN,Ngoh GC,Chua AS,Lee MG
    Elucidation of the effect of ionic liquid pretreatment on rice husk via structural analyses.
    Biotechnol Biofuels, 2012. 5(1): p. 67
    [PMID:22958710]
  6. Zhang G,Huang K,Jiang X,Huang D,Yang Y
    Acetylation of rice straw for thermoplastic applications.
    Carbohydr Polym, 2013. 96(1): p. 218-26
    [PMID:23688473]
  7. Wei X, et al.
    Fine mapping of BH1, a gene controlling lemma and palea development in rice.
    Plant Cell Rep., 2013. 32(9): p. 1455-63
    [PMID:23689259]
  8. Hu S, et al.
    A point mutation in the zinc finger motif of RID1/EHD2/OsID1 protein leads to outstanding yield-related traits in japonica rice variety Wuyunjing 7.
    Rice (N Y), 2013. 6(1): p. 24
    [PMID:24280027]
  9. Ji Y, et al.
    A comprehensive assessment of human exposure to phthalates from environmental media and food in Tianjin, China.
    J. Hazard. Mater., 2014. 279: p. 133-40
    [PMID:25051237]
  10. Huang Y, et al.
    Phthalates in Commercial Chinese Rice Wines: Concentrations and the Cumulative Risk Assessment to Adult Males in Shanghai.
    Biomed. Environ. Sci., 2014. 27(10): p. 819-23
    [PMID:25341819]
  11. Tamaki S, et al.
    FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(8): p. E901-10
    [PMID:25675495]
  12. Wu F, et al.
    The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
    Plant J., 2017. 89(2): p. 310-324
    [PMID:27689766]