PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00133.1.g00770.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 234aa MW: 26176.9 Da PI: 7.1708

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00133.1.g00770.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.4	3.9e-09	154	202	2	47
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 + W+ d+l+ +a + + ++ +W+ +ar +g +++ ++++ ++qk+ Zjn_sc00133.1.g00770.1.am.mk 154 QEWSRSQDKLFERALAVYDTDtpdRWHNVARFIGGTKSVEEVRRHYQKL 202 78*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.423	148	203	IPR017877	Myb-like domain
SMART	SM00717	7.1E-10	152	205	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.63E-11	154	210	IPR009057	Homeodomain-like
Pfam	PF00249	2.8E-7	154	202	IPR001005	SANT/Myb domain
CDD	cd00167	2.59E-7	155	202	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MSINHLEEPN SVPDVPGAFQ LSHSRAGRLS PLSSEDTDLS RANFSADQSP SWPWHRSAST 60 DGQEAASKPF QGIPICHISR PEKEPSVFLL FRTLSLGDSK SNPNEPDLSF KAPFPTNHPS 120 HRHAHTSEED QSTLPVPHCP LIRNRTMASN TKSQEWSRSQ DKLFERALAV YDTDTPDRWH 180 NVARFIGGTK SVEEVRRHYQ KLEEDVARIE SGGAPFHWYA AAAPPPARTV QRGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	6e-18	147	216	1	70	RADIALIS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP47067	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.2	5e-26	RAD-like 6