PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00133.1.g00780.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 97aa    MW: 10930.5 Da    PI: 9.1212
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00133.1.g00780.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.3e-111057347
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                                   WT++ d+l+ +a + + ++   +W+ Iar +g g+t  ++ksr+q +
  Zjn_sc00133.1.g00780.1.am.mk 10 QWTKQQDKLFEQALAVYDKEtpdRWHNIARAVGGGKTVDEVKSRFQLL 57
                                  7*****************99*************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.224358IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-4556IPR009057Homeodomain-like
SMARTSM007172.2E-9760IPR001005SANT/Myb domain
SuperFamilySSF466892.17E-13966IPR009057Homeodomain-like
PfamPF002492.0E-81056IPR001005SANT/Myb domain
CDDcd001671.53E-71158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASMSMRSSQ WTKQQDKLFE QALAVYDKET PDRWHNIARA VGGGKTVDEV KSRFQLLVHD  60
VGRIENGEVA FPAYRCPGVG STAMAGYETD RMKHLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-23197192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0078583e-37AC007858.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I, complete sequence.
GenBankAC1209883e-37AC120988.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017N18, complete sequence.
GenBankAK2415283e-37AK241528.1 Oryza sativa Japonica Group cDNA, clone: J065171E20, full insert sequence.
GenBankAP0149613e-37AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126133e-37CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8363543e-37CT836354.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA043L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154612.11e-43protein RADIALIS-like 3
RefseqXP_020154876.11e-43protein RADIALIS-like 3
SwissprotQ1A1735e-30RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A453A0972e-42A0A453A097_AEGTS; Uncharacterized protein
TrEMBLN1QTK12e-42N1QTK1_AEGTA; DnaJ homolog subfamily C member 2
STRINGEMT001434e-43(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-32RAD-like 6