PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00138.1.g00570.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 367aa    MW: 39473 Da    PI: 5.682
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00138.1.g00570.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.1e-30175233259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp++++ tY+geHnh 
  Zjn_sc00138.1.g00570.1.sm.mkhc 175 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERCRTDPNTFILTYTGEHNHA 233
                                     79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-30162235IPR003657WRKY domain
PROSITE profilePS5081132.833169235IPR003657WRKY domain
SuperFamilySSF1182907.72E-26173235IPR003657WRKY domain
SMARTSM007747.8E-36174234IPR003657WRKY domain
PfamPF031063.4E-25176232IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEEEHCCNSW DLDAVVRLAC RRRRLSPPPV QVNDPFDSFP PTPSLPPQGP PGAPNPANEK  60
EADAGWRFPD LRSGDGQDGD ELLRALMAAR PPVPPSLPPP PLPTLPPPPQ QQQQQPVVVT  120
PTAEVPVQAR AGPASARARA QPSGRQVPGA VQRSKRRKNQ VKKMVRHVPA DGSSSDVWAW  180
RKYGQKPIKG SPYPRGYYRC SSSKGCAARK QVERCRTDPN TFILTYTGEH NHAAPTHRNS  240
LAGTTRHKCP SVASPPPPSV VVGSSESQQQ QQPSPSAPST SAGLSPTTPL RTPSMEEEDD  300
EEEDELLVED MEMAGEDELL FLHGDVDSAV PLQPMSSVFD VVDEPFLGSP WASTTTGSPA  360
AGAAAES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-19158236280Disease resistance protein RRS1
5w3x_D5e-19158236280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613701e-156BT061370.1 Zea mays full-length cDNA clone ZM_BFb0140H07 mRNA, complete cds.
GenBankHQ8587191e-156HQ858719.1 Zea mays clone UT1178 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130964.11e-129uncharacterized protein LOC100192069
SwissprotO046094e-49WRK22_ARATH; WRKY transcription factor 22
TrEMBLA0A1D6QP271e-127A0A1D6QP27_MAIZE; WRKY transcription factor 22
STRINGGRMZM2G038158_P011e-128(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.15e-47WRKY family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  4. Kloth KJ, et al.
    AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.
    J. Exp. Bot., 2016. 67(11): p. 3383-96
    [PMID:27107291]
  5. Camborde L, et al.
    Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy.
    Nat Protoc, 2017. 12(9): p. 1933-1950
    [PMID:28837131]
  6. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]