PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00140.1.g00440.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 254aa    MW: 27801.1 Da    PI: 8.2201
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00140.1.g00440.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.4e-1870159299
                                   EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                            B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                   fkv  p+ +    rl +p  f  e+ ++    ++ ++l+ +sg +Wev l  + +s++  +t+GWkeF+ ++ L +g f+v
  Zjn_sc00140.1.g00440.1.sm.mk  70 FKVYFPEQS--AVRLKIPPAFH-EYvKEA--PDRVVSLKGPSGHTWEVVL--TSGSQGLSFTQGWKEFACDHSLLAGHFMV 143
                                   555544433..34799*****8.562444..3458***************..***************************** PP

                                   EEE-SSSEE..EEEEE-S CS
                            B3  82 Fkldgrsefelvvkvfrk 99 
                                   F++dg+sef   v vf++
  Zjn_sc00140.1.g00440.1.sm.mk 144 FTYDGQSEF--SVDVFSA 159
                                   ****99999..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.05667160IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-2167161IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1968160IPR015300DNA-binding pseudobarrel domain
CDDcd100177.12E-1769158No hitNo description
SMARTSM010195.6E-1469160IPR003340B3 DNA binding domain
PfamPF023622.4E-1578159IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRKNPQGGS GAAPAAAATE RGKGKRTKEG SAGRKERRSG REQRKVTEAA RGEEEEEEGG  60
APVAAGEQFF KVYFPEQSAV RLKIPPAFHE YVKEAPDRVV SLKGPSGHTW EVVLTSGSQG  120
LSFTQGWKEF ACDHSLLAGH FMVFTYDGQS EFSVDVFSAS GVKDKAAPNV EPRKEPVIKQ  180
EEEQDCVVDM DALDTPQVSA DLPPVEVDRR NTRKRVRQMN DAMEGDTALK TKGQSSAQKK  240
HEKRKPKAAA EYPV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827675.18e-55B3 domain-containing protein Os11g0197600-like
RefseqXP_025827676.18e-55B3 domain-containing protein Os11g0197600-like
TrEMBLA0A3L6PN772e-54A0A3L6PN77_PANMI; B3 domain-containing protein
STRINGPavir.J06349.1.p1e-51(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.16e-17B3 family protein