PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00144.1.g00040.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 535aa    MW: 58805.8 Da    PI: 11.7853
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00144.1.g00040.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.24e-503654891128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrFhPtd elv++yL++k++g +l +  vi+evd+yk++Pw+Lp+k+ ++ekewyfFs+rd+ky++g+r+nra+ +g
  Zjn_sc00144.1.g00040.1.am.mk 365 LPPGFRFHPTDGELVNYYLCRKCAGLPLAA-PVIAEVDLYKFDPWQLPEKAMGGEKEWYFFSPRDRKYPNGSRPNRAAGTG 444
                                   79*************************999.89***************8888999************************** PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   yWkatg dk+v s   + v +kk Lvfy g+ pkg+kt+W+mheyrl
  Zjn_sc00144.1.g00040.1.am.mk 445 YWKATGADKPVGS--PRPVAIKKALVFYAGKPPKGVKTNWIMHEYRL 489
                                   ***********99..779***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-56361494IPR003441NAC domain
PROSITE profilePS5100553.589365512IPR003441NAC domain
PfamPF023654.5E-25366489IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MFGPTRGRSP RTIIGRYELG LITVTPPALL TSGVTSTAVV LFPRAGGRRG HRAGAGGVTA  60
EAGEGDGDSG QLIRTRRRAR QRGELADAWG KTCPPDSLGG AAQLRCLSVV RPVPSRGRVS  120
PRRGRSLGDR EPCDAAARHV TSRSRRVHAN DDRDQTKPSK ARDPGHCAAR ESSARLSARG  180
GSRRPRLLPP RSSGLEINPP ASARPRQPSP ATKLLTQAMT KSRPALDPHR RIRPPTRRAR  240
LRDARRASSR ALGQTSLERQ LARASHRPSV DTCPAAVYIV APGTASWCST HAYSRSPERP  300
DTLTQRERER ERESSLPSSS GSVLLLRRRP PSPRDPTRSS VRPATHPPTS LDRTLEMDCG  360
DALQLPPGFR FHPTDGELVN YYLCRKCAGL PLAAPVIAEV DLYKFDPWQL PEKAMGGEKE  420
WYFFSPRDRK YPNGSRPNRA AGTGYWKATG ADKPVGSPRP VAIKKALVFY AGKPPKGVKT  480
NWIMHEYRLA DVDRSAAARK RTNNALRHAP YRAVPFDPAC GWLRRLSQQT SLTFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-663564896140Stress-induced transcription factor NAC1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0924081e-171FP092408.1 Phyllostachys edulis cDNA clone: bphylf024g16, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6765422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.13e-80NAC family protein