PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00144.1.g00740.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 162aa    MW: 17509.8 Da    PI: 10.2346
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00144.1.g00740.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.5e-16247756
                           AP2  7 rwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                                  r+++ +g+W+AeIrdp     +  +r++lg+f+t e Aa a++ a+++++g+
  Zjn_sc00144.1.g00740.1.sm.mk  2 RQRP-WGKWAAEIRDP-----HraARVWLGTFDTVEAAALAYDVAALRFRGN 47
                                  7899.**********7.....338*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.902155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-23247IPR001471AP2/ERF domain
CDDcd000181.10E-13251No hitNo description
PfamPF008471.4E-10246IPR001471AP2/ERF domain
SMARTSM003801.6E-20255IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-16249IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MRQRPWGKWA AEIRDPHRAA RVWLGTFDTV EAAALAYDVA ALRFRGNFPE SAALPAAPTV  60
PQAASEPPPA RPEGVLESQA AMMMGDGGGE YAEYARFLQG AGEPPRFVDQ TVARAPQTPS  120
AVPVPGAAHH FRPQSSRSSI HRSCQFLVRA LGGGLRRRQE TP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-16149963ATERF1
3gcc_A6e-16149963ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071254e-44AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence.
GenBankAL7139024e-44AL713902.2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL8448744e-44AL844874.1 Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149684e-44AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126204e-44CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankCU4063554e-44CU406355.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109D06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619856.19e-29ethylene-responsive transcription factor ERF110
TrEMBLA0A3L6Q1586e-31A0A3L6Q158_PANMI; Putative AP2/EREBP transcription factor superfamily protein
STRINGPavir.Ha01720.1.p8e-30(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-19ethylene response factor 110