PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00147.1.g00470.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WOX

Protein Properties

Length: 389aa MW: 40615 Da PI: 9.7147

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00147.1.g00470.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.1	5.5e-07	100	117	40	57
-HHHHHHHHHHHHHHHHC CS Homeobox 40 terqVkvWFqNrRakekk 57 +++V++WFqNr+a+ k+ Zjn_sc00147.1.g00470.1.am.mk 100 GDANVFYWFQNRKARSKN 117 589************995 PP
2	Wus_type_Homeobox	40.8	5.3e-14	95	118	41	64
Wus_type_Homeobox 41 eyGkiedkNVfyWFQNrkaRerqk 64 eyG ++d+NVfyWFQNrkaR+++k Zjn_sc00147.1.g00470.1.am.mk 95 EYGPVGDANVFYWFQNRKARSKNK 118 7*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00046	1.9E-4	100	116	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MAASPGEPRD HSLRGTCANR GVGRGDRERS SSVQASERAS ARRHGVLQQQ ALAEHVQVQA 60 RRPAVAVAAG HERLAALPRL RSVLHYHRKL HQALEYGPVG DANVFYWFQN RKARSKNKLR 120 TGAARRAAPA RAPPACQAAA ALVAPAPAPP QILNQQVQLL ASPVQQAPTY SSSSSSDRSS 180 GSSRPAAKPA PQAMSATEAM DLLGPLAAAC PQVYYQGQPA PAATPAPSPK MLDHVATDET 240 ILFPWPQGYC LSAAELAAIL GSGAQYTHVP VQQQPQALPA VPSDRFQRGL AVDGVIAGGA 300 PAAAAVPATG PHEGGGVAVL CIGDSATGRS VVREVAANRH LDVRALFGEA AVLFRYVGDG 360 ERPVHVPVDA ASGCTVEPLQ NGVVYWVLV

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MAASPGEPRD HSLRGTCANR GVGRGDRERS SSVQASERAS ARRHGVLQQQ ALAEHVQVQA  60
RRPAVAVAAG HERLAALPRL RSVLHYHRKL HQALEYGPVG DANVFYWFQN RKARSKNKLR  120
TGAARRAAPA RAPPACQAAA ALVAPAPAPP QILNQQVQLL ASPVQQAPTY SSSSSSDRSS  180
GSSRPAAKPA PQAMSATEAM DLLGPLAAAC PQVYYQGQPA PAATPAPSPK MLDHVATDET  240
ILFPWPQGYC LSAAELAAIL GSGAQYTHVP VQQQPQALPA VPSDRFQRGL AVDGVIAGGA  300
PAAAAVPATG PHEGGGVAVL CIGDSATGRS VVREVAANRH LDVRALFGEA AVLFRYVGDG  360
ERPVHVPVDA ASGCTVEPLQ NGVVYWVLV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969472.1	2e-44	WUSCHEL-related homeobox 7
Swissprot	Q0JKK6	5e-32	WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBL	A0A3L6QYW7	1e-63	A0A3L6QYW7_PANMI; WUSCHEL-related homeobox 7 isoform X5
STRING	Si004249m	8e-44	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2666	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	8e-10	homeobox-3