PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00147.1.g00830.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 208aa    MW: 23917 Da    PI: 10.9246
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00147.1.g00830.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-081761344
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                   W++ E +l+ ++ + +G +   +W++++r mg  +t++++++++
  Zjn_sc00147.1.g00830.1.am.mk 17 EWSPRENKLFEQVLACYGEDtpdRWHKVSRAMGGIKTAEEVRLHY 61
                                  7********************************778********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.621065IPR017877Myb-like domain
SMARTSM007173.1E-61467IPR001005SANT/Myb domain
SuperFamilySSF466892.56E-101672IPR009057Homeodomain-like
CDDcd001671.96E-51761No hitNo description
PfamPF002492.6E-61761IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSSGSRSSSR TGNAASEWSP RENKLFEQVL ACYGEDTPDR WHKVSRAMGG IKTAEEVRLH  60
YEILMEDYEL IKSGRWHRPR PRALSRRWRR VWVHSREAAR DLSFLNVHLA EGTGPDMGSL  120
EITKYMQGAG GLGATTSADK ANEWLRYAMR RFAYVRTRTR AFFDVHGATS VRRLSCRRLN  180
TQQQCCRRTD AGTSLVEELH RSRKRPGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1618791171RADIALIS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6769622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-18RAD-like 6