PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00148.1.g00850.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YA

Protein Properties

Length: 162aa MW: 18045.6 Da PI: 10.1358

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00148.1.g00850.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	41.2	5.3e-13	107	143	3	40
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylh 40 ++YVNaKQ+++Il+RR +Rak+++e+++ + +rk h Zjn_sc00148.1.g00850.1.sm.mk 107 AIYVNAKQFKGILRRRLARAKAARERRV-SMKRKVTNH 143 69**************************.666665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.8E-4	103	159	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	13.853	104	162	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.8E-12	107	144	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MNLNYQEHGM GFLQGAGAAH KFTPISAAGV SYLGKQLAFH EPSAPTSFAY PAWQQDYSGC 60 FDLALGQSMA CNVDQRHDYG VCSTYGAHVV GRRKVLLQPA ITVEEPAIYV NAKQFKGILR 120 RRLARAKAAR ERRVSMKRKV TNHAAESFSS RSSCTFLHFF FH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645550.1	2e-28	nuclear transcription factor Y subunit A-2
TrEMBL	A0A0A9ILA9	8e-49	A0A0A9ILA9_ARUDO; Uncharacterized protein
STRING	OPUNC07G03530.1	4e-30	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP47196	3	3