PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00155.1.g00090.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 145aa    MW: 15891.7 Da    PI: 6.9179
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00155.1.g00090.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000162446123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C+ C + F++   L  H+++H
  Zjn_sc00155.1.g00090.1.sm.mk 24 YPCSFCERDFRSAQALGGHMNVH 46
                                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.66E-62150No hitNo description
Gene3DG3DSA:3.30.160.608.2E-42248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0942451IPR007087Zinc finger, C2H2
PfamPF139129.0E-62447IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MEREQQQPWS FMASSSFTWP PRSYPCSFCE RDFRSAQALG GHMNVHRRDR ARLKHAGSPP  60
PPPTAASSRA TAVEVVTPPV PNLNYSPPPP PQYHRDGGKK RSWWTDDVSC LEVGVLMSSC  120
TTASTDPAGG PDDDGLDLEL RLGVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-121946229superman protein
2l1o_A1e-121946229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804370.13e-34transcriptional regulator SUPERMAN-like
TrEMBLA0A3L6QJZ53e-33A0A3L6QJZ5_PANMI; Transcriptional regulator SUPERMAN-like
STRINGPavir.Ab00024.1.p9e-35(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.14e-20C2H2 family protein