PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00155.1.g00600.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 195aa MW: 22735.8 Da PI: 8.065

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00155.1.g00600.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	71	90	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C Cg++F + +Lk+H++ Zjn_sc00155.1.g00600.1.sm.mkhc 71 RCLECGTCFQKPAHLKQHMQ 90 7*****************96 PP
2	zf-C2H2	24.5	6.7e-08	98	122	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dC+ s++rk++L+rH+ tH Zjn_sc00155.1.g00600.1.sm.mkhc 98 FNCPleDCPFSYKRKDHLNRHMLTH 122 78**********************9 PP
3	zf-C2H2	16.7	2e-05	127	152	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C++sFs k n++rH + H Zjn_sc00155.1.g00600.1.sm.mkhc 127 FSCTvdGCDRSFSIKANMQRHVKEfH 152 899*******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	12	24	46	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	1.4	70	92	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.448	70	97	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.4E-6	71	96	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.05E-11	82	124	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.8E-8	97	124	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF00096	6.2E-6	98	122	IPR007087	Zinc finger, C2H2
SMART	SM00355	3.1E-4	98	122	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.097	98	127	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	100	122	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.99E-9	108	157	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.9E-10	125	153	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0028	127	152	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.219	127	157	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	129	152	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MCSADEFDGE KKVGKTVCKD IRRYKCDFCN VVRSKKCLIQ AHMVEHHKDE LDKSEIYNSN 60 GGKIVHEVEQ RCLECGTCFQ KPAHLKQHMQ CHSQERLFNC PLEDCPFSYK RKDHLNRHML 120 THQGKSFSCT VDGCDRSFSI KANMQRHVKE FHEGGNTAKS KQQFVCKEEG WRLRGDRCAI 180 AITFQRWTEE ESVDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tf3_A	1e-14	74	152	10	89	TRANSCRIPTION FACTOR IIIA
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795605.1	2e-93	transcription factor IIIA-like isoform X1
TrEMBL	A0A2T7F0W9	3e-93	A0A2T7F0W9_9POAL; Uncharacterized protein
STRING	Si020193m	2e-88	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP67767	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	3e-39	transcription factor IIIA