PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00159.1.g00110.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 351aa    MW: 36985.3 Da    PI: 9.6034
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00159.1.g00110.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30270328259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                    D y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+  dp+++++tYegeH h+
  Zjn_sc00159.1.g00110.1.sm.mk 270 ADDYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERDPADPSMLIVTYEGEHCHS 328
                                   69************************9888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.8E-19218267IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.2E-32258328IPR003657WRKY domain
PROSITE profilePS5081130.205264330IPR003657WRKY domain
SuperFamilySSF1182904.97E-26267328IPR003657WRKY domain
SMARTSM007745.5E-37269329IPR003657WRKY domain
PfamPF031065.4E-26271327IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MITLDLMGGY GRADEQVAIQ EAAAAGLRGM EHLISQLSRT GTSDSDSSSP SPALQQQQQD  60
EDARKKQEPQ QMDCREVTDM TVSKFKKVIS MLNRTGHARF RRGPVVAQSE GPAAEVSESA  120
PAPARSAPPL TLDFTKAAAA AAASGFGNGE RDNVSGAGFN VSGASSSFFS RSTSVTGDGS  180
VSNGRGGSFL TMLQPAHAAA AASCGTRPPL SSSGAGQKRR CHDHAHSENL AGGRFGPTGG  240
RCHCSKRRKH RVKRTIRVPA ISPKVADIPA DDYSWRKYGQ KPIKGSPYPR GYYKCSTVRG  300
CPARKHVERD PADPSMLIVT YEGEHCHSPG AAAAAADASP PLAPLPELPN H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19257327271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425791e-103BT042579.1 Zea mays full-length cDNA clone ZM_BFb0345E21 mRNA, complete cds.
GenBankEU9669051e-103EU966905.1 Zea mays clone 298088 WRKY51 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975218.11e-149WRKY transcription factor WRKY51
SwissprotQ6IEN11e-143WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBLA0A3L6QBB21e-156A0A3L6QBB2_PANMI; Putative WRKY transcription factor 17
STRINGSi012025m1e-148(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.14e-84WRKY DNA-binding protein 11