PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00179.1.g00140.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 95aa    MW: 10639.2 Da    PI: 9.0369
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00179.1.g00140.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000672244123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                    ykC+ Cg + s ks+ + H   H
  Zjn_sc00179.1.g00140.1.am.mkhc 22 YKCEFCGVVRSKKSLIRAHVLEH 44
                                    9**************99999985 PP
2zf-C2H226.51.6e-086889223
                                    EETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                    +C++Cgk+F+ + +Lk+H+++H
  Zjn_sc00179.1.g00140.1.am.mkhc 68 ECEKCGKRFKKPVHLKQHMQSH 89
                                    6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.78E-92089No hitNo description
SMARTSM003559.42244IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.1136794IPR007087Zinc finger, C2H2
SMARTSM003550.00236789IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.6E-76891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000967.5E-66889IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MAGTTVATAG TTPAPVRDVR RYKCEFCGVV RSKKSLIRAH VLEHHKDDVD GVEAYQGCGV  60
PSKELIQECE KCGKRFKKPV HLKQHMQSHS LETTY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566649.12e-32transcription factor IIIA isoform X1
TrEMBLA0A3L6RD091e-31A0A3L6RD09_PANMI; Uncharacterized protein
STRINGBRADI2G37790.16e-32(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17974810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.22e-18transcription factor IIIA