PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00179.1.g00270.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 189aa MW: 19435.1 Da PI: 7.1479

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00179.1.g00270.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	76.5	4.7e-24	70	129	1	60
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamss 60 +CaaCk+lrr+C++ Cvlapyfp ++p kfa +h++FGasn++kll++lpee+r da+++ Zjn_sc00179.1.g00270.1.am.mk 70 PCAACKILRRRCVDRCVLAPYFPPTDPLKFATAHRVFGASNIIKLLQELPEEHRADAVAA 129 7******************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.972	69	170	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-23	70	129	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MAPPRRASPP SALQVKSKAQ QATHMDLVSH APTTMDESSA CTVVATPPPQ HGPSTPPASP 60 QPAAAVVLSP CAACKILRRR CVDRCVLAPY FPPTDPLKFA TAHRVFGASN IIKLLQELPE 120 EHRADAVAAA SSSPAPYCAV DYSSHLAAAV APAAAQAAAD ALYVVDGAGA GGLQLHASAV 180 SWGDESLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-22	69	129	10	70	LOB family transfactor Ramosa2.1
5ly0_B	1e-22	69	129	10	70	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	2e-40	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960340.1	2e-42	LOB domain-containing protein 1
Swissprot	Q9SK08	2e-34	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A1E5VX41	5e-44	A0A1E5VX41_9POAL; LOB domain-containing protein 1
TrEMBL	A0A3L6SZG8	4e-44	A0A3L6SZG8_PANMI; LOB domain-containing protein 1
STRING	Si024430m	7e-42	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-29	LOB domain-containing protein 11