PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00187.1.g00110.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 636aa MW: 70081.6 Da PI: 7.2516

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00187.1.g00110.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.3e-06	99	111	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 CkyG++C+F+H+ Zjn_sc00187.1.g00110.1.sm.mkhc 99 SCKYGASCRFSHD 111 7***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	9.441	82	113	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.113	126	151	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	2.0E-39	329	463	IPR013785	Aldolase-type TIM barrel
CDD	cd02801	4.66E-65	333	516	No hit	No description
SuperFamily	SSF51395	5.04E-48	333	596	No hit	No description
Pfam	PF01207	7.8E-25	336	464	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	417	435	IPR018517	tRNA-dihydrouridine synthase, conserved site
Gene3D	G3DSA:3.20.20.70	6.2E-12	467	523	IPR013785	Aldolase-type TIM barrel
Pfam	PF01207	1.7E-6	471	554	IPR001269	tRNA-dihydrouridine synthase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008033	Biological Process	tRNA processing
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence Send to blast
MAATAPATDP PDSSPAVASA SSPSHPTPEE LVARAVAPVK PAFLRPPPVR DAPKEEGKAG 60 GGVTAEKKSK RQLRRERQQE KKSTSHLCIE VGKSGNVDSC KYGASCRFSH DINAYLAQKP 120 ADLEGTCPFT ASGMLCPYGL TCRYLGTHKD NLPSENCPEG DREINSLNKD TQKLLWKNKY 180 DFPKASTQIK LLGLKDIKKN KVNAASDELK ADNDYPDKSC EQKGNGNCEF PCSISASVKP 240 ESALCKETDN SGGEALVANS VPCDEPRPLK KSKVEADETQ IQGAGIHDKE AESENHKLNY 300 GFEVPSDNQN SCRIDLITTP HLREKKIIDF RGKLYLAPLT TVGNLPFRRL CKTLGADITC 360 GEMAMCSNLL QGQASEWALL RRHSSEDLFG VQICGPYPDT IARTVELVDN ECSVDFIDIN 420 MGCPIDIVVN KGAGSSLLTK PMRIKSIVKA ASTVTEKLIT VKCAQKAPDN LHVIGNGDVF 480 SFTDWNKHLS DCSKISSCMI ARGALIKPWI FTEIKEQKHW DITSGERLNI LKDFIRFGLE 540 HWGSDSKGVE TTRHFLLEWL SYTCRHIPVG LLDVIPQRLN WRPPSYYGRD DLETLMVSDS 600 AADWIRISEM LLGKVPEGFT FAPKHKSNAY DRAENG

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence Send to blast

MAATAPATDP PDSSPAVASA SSPSHPTPEE LVARAVAPVK PAFLRPPPVR DAPKEEGKAG  60
GGVTAEKKSK RQLRRERQQE KKSTSHLCIE VGKSGNVDSC KYGASCRFSH DINAYLAQKP  120
ADLEGTCPFT ASGMLCPYGL TCRYLGTHKD NLPSENCPEG DREINSLNKD TQKLLWKNKY  180
DFPKASTQIK LLGLKDIKKN KVNAASDELK ADNDYPDKSC EQKGNGNCEF PCSISASVKP  240
ESALCKETDN SGGEALVANS VPCDEPRPLK KSKVEADETQ IQGAGIHDKE AESENHKLNY  300
GFEVPSDNQN SCRIDLITTP HLREKKIIDF RGKLYLAPLT TVGNLPFRRL CKTLGADITC  360
GEMAMCSNLL QGQASEWALL RRHSSEDLFG VQICGPYPDT IARTVELVDN ECSVDFIDIN  420
MGCPIDIVVN KGAGSSLLTK PMRIKSIVKA ASTVTEKLIT VKCAQKAPDN LHVIGNGDVF  480
SFTDWNKHLS DCSKISSCMI ARGALIKPWI FTEIKEQKHW DITSGERLNI LKDFIRFGLE  540
HWGSDSKGVE TTRHFLLEWL SYTCRHIPVG LLDVIPQRLN WRPPSYYGRD DLETLMVSDS  600
AADWIRISEM LLGKVPEGFT FAPKHKSNAY DRAENG

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM399264	0.0	KM399264.1 Sorghum bicolor FMN-linked oxidoreductases superfamily protein mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824565.1	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X2
Swissprot	Q7XT07	0.0	DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A3L6QB05	0.0	A0A3L6QB05_PANMI; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	GRMZM2G120740_P03	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10322	25	27

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]