PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00205.1.g00060.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 303aa    MW: 32624.4 Da    PI: 8.4158
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00205.1.g00060.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000171972341355
                                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                     R+ i +++ eLrel+P+ a      K s  + Lek+v+++  Lq
  Zjn_sc00205.1.g00060.1.sm.mkhc 197 RQLIQDRIKELRELVPNgA------KCSIDALLEKTVKHMLFLQ 234
                                     67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.4E-286151IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00104178234No hitNo description
PROSITE profilePS5088810.487184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-5197240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-5197242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAVGDALRRL CEEIGWSYAV FWKAIGAADP VHLVWEDGYC GHPSCSAGSE PTEILPAEVG  60
CSAAADGTMC SLVKKVMASQ VHVVGEGTVG RAAFTGNHQW IVHGAANGHG LSSSEVAAEM  120
NDQFKTGIQT IAIIPVLPRG VLQLGSTGLI RLWIESGQNL KCESVSASNS KGLDTPSKTS  180
RKRSRPGESA KPRPKDRQLI QDRIKELREL VPNGAKCSID ALLEKTVKHM LFLQSVMKHA  240
DKLRHSTESK ANRDVTRMEI FLSLVRLLEP NCDGSGAAEN ANIINRPLGL VHQPVIPATG  300
RIQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827940.12e-83transcription factor LHW-like
RefseqXP_025877378.11e-83transcription factor LHW isoform X2
TrEMBLA0A2T7CK752e-82A0A2T7CK75_9POAL; Uncharacterized protein
TrEMBLA0A3L6PKE52e-82A0A3L6PKE5_PANMI; Transcription factor LHW-like
TrEMBLI1QXV99e-86I1QXV9_ORYGL; Uncharacterized protein
STRINGPavir.Hb01911.1.p2e-82(Panicum virgatum)
STRINGORGLA11G0035100.11e-86(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.33e-33conserved peptide upstream open reading frame 7