PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00205.1.g00070.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 148aa MW: 16432.1 Da PI: 5.0431

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00205.1.g00070.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.1	1.9e-10	25	62	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Zjn_sc00205.1.g00070.1.sm.mkhc 25 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 62 665559******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.969	3	66	IPR001356	Homeobox domain
SMART	SM00389	1.2E-9	6	70	IPR001356	Homeobox domain
CDD	cd00086	5.28E-14	6	67	No hit	No description
SuperFamily	SSF46689	2.74E-18	7	73	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-30	9	72	IPR009057	Homeodomain-like
Pfam	PF05920	2.8E-19	23	62	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MQGGAWRPQR GLPERSVSIL RAWLFEHFLH PYPKDSDKIM LAKQTGLTRS QVSNWFINAR 60 VRLWKPMVEE MYLEETKDRD AAAGGNDEGK SGGGGKSGNV DDNGGVDATP RPDREAAKGV 120 HGSSLLELAR DQQTVHAGFY YGDEEDED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-18	12	70	5	63	Homeobox protein Meis2
3k2a_B	4e-18	12	70	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT055979	2e-94	BT055979.2 Zea mays full-length cDNA clone ZM_BFc0087K12 mRNA, complete cds.
GenBank	BT085241	2e-94	BT085241.2 Zea mays full-length cDNA clone ZM_BFb0339N15 mRNA, complete cds.
GenBank	BT086092	2e-94	BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827941.1	1e-63	BEL1-like homeodomain protein 1
Refseq	XP_025827942.1	1e-63	BEL1-like homeodomain protein 1
Refseq	XP_025827943.1	1e-63	BEL1-like homeodomain protein 1
Refseq	XP_025827944.1	1e-63	BEL1-like homeodomain protein 1
Swissprot	O65685	7e-43	BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBL	A0A1E5WEK5	9e-63	A0A1E5WEK5_9POAL; BEL1-like homeodomain protein 1
STRING	Pavir.Hb01912.1.p	1e-66	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7715	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	2e-44	BEL1-like homeodomain 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226]