PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00209.1.g00230.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 249aa    MW: 27809.8 Da    PI: 7.8157
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00209.1.g00230.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-155396146
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                  rgr T++E+  ++++++q+G++ W++Iar+++ gRt++++k++w++
  Zjn_sc00209.1.g00230.1.sm.mk 53 RGRITADEERVILELHAQWGSR-WSRIARCLP-GRTDNEIKNFWRT 96
                                  899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.46E-1933102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-93359IPR009057Homeodomain-like
PROSITE profilePS500904.313447IPR017877Myb-like domain
PROSITE profilePS5129420.87748102IPR017930Myb domain
SMARTSM007175.1E-1352100IPR001005SANT/Myb domain
PfamPF002497.3E-135396IPR001005SANT/Myb domain
CDDcd001673.47E-105796No hitNo description
Gene3DG3DSA:1.10.10.602.1E-176098IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVIDRARSTG SRRHDQSGVL TICFLFSSSA RLKRTGKSCR LRWVNYLHPG LRRGRITADE  60
ERVILELHAQ WGSRWSRIAR CLPGRTDNEI KNFWRTRTRK KALEHRRNTS NGNTATASSL  120
SSSSSAISSG SPPNRGWSSS PLVTESPPQG RSGRDDEAEL EEASTTTVAS QPQHQQQQLE  180
QKHCYTMDDQ LWNEMEAASA GYVADSCGGA GHDHGGAVVA VETPPSMPSP VWEFCSDYCL  240
LWRIDDEEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-163410240108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283609e-80KJ728360.1 Zea mays clone pUT6642 MYB transcription factor (MYB62) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680579.13e-75LOW QUALITY PROTEIN: transcription factor MYB59
TrEMBLK3ZD381e-70K3ZD38_SETIT; Uncharacterized protein
STRINGSi024470m2e-71(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.23e-39myb domain protein 59