PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00233.1.g00010.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 215aa MW: 23771.8 Da PI: 6.5094

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00233.1.g00010.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	53.2	8.4e-17	11	81	2	72
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardP 72 C aC+++rrkC++dCv+ap+f ++ ++fa++ + FGas v++ l+ ++ er ++++ lv A a + P Zjn_sc00233.1.g00010.1.sm.mk 11 CVACRHMRRKCEPDCVFAPHFGPDDGERFAALDRAFGASFVSQQLAGREPRERAATIEMLVRIAIASVPRP 81 9******************************************************9999988777776666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.347	9	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.4E-16	11	81	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MASSEEAEKV CVACRHMRRK CEPDCVFAPH FGPDDGERFA ALDRAFGASF VSQQLAGREP 60 RERAATIEML VRIAIASVPR PAGVKAQQEA AAAQFSREQA LIRQYHTGTG FGVPAYQSAE 120 YQAMIASHQE MLMRNAGALY RPLELEELLQ GAAAKQKSTL QPVAEVQQQR TAAEEVARHH 180 DMVMQQAAAA QNYQALGLEQ QHQNRQLAED VMHQT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	4e-15	LBD family protein