PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00254.1.g00100.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 143aa MW: 15970 Da PI: 11.7599

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00254.1.g00100.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.5	7.8e-35	20	73	5	58
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 +cp+C s++tkfCyy ny++sqPr+fC+aCrryWt GG+lrnvP+Gg++rk+ Zjn_sc00254.1.g00100.1.sm.mk 20 GEQCPQCASHDTKFCYYKNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKS 73 579*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	26.235	21	75	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-30	21	73	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-21	22	68	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	23	59	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MQEVEHTAVT EANGNNGARG EQCPQCASHD TKFCYYKNYN TSQPRHFCRA CRRYWTLGGS 60 LRNVPIGGST RKSPLLAHPV GAAGEQAPRR LWRRQRGGAS HGPPQLAVRA RRCGAGAGGA 120 QRFRLRAWPR ASNAEWRGRC LRW

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582406	1e-68	KC582406.1 Sorghum bicolor dof9 protein (dof9) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008644658.1	2e-37	dof zinc finger protein DOF3.4
TrEMBL	A0A1D6GLQ1	4e-36	A0A1D6GLQ1_MAIZE; Dof zinc finger protein DOF1.6
STRING	GRMZM2G061292_P01	7e-37	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	6e-26	DOF zinc finger protein 1