PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00736.1.g00010.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 315aa    MW: 35658.8 Da    PI: 5.6682
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00736.1.g00010.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-182673148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+W+ eEd+llv++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Zjn_sc00736.1.g00010.1.sm.mkhc 26 RGPWSVEEDLLLVNYIAAHGEGQWNALARCAGLKRTGKSCRLRWLNYL 73
                                    89********************************************97 PP
2Myb_DNA-binding53.55.5e-1779122146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     rg++T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Zjn_sc00736.1.g00010.1.sm.mkhc  79 RGNFTAQEQLLILELHSRWGNR-WSRIAQHLP-GRTDNEIKNYWRT 122
                                     89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4892173IPR017930Myb domain
SuperFamilySSF466891.31E-3024120IPR009057Homeodomain-like
SMARTSM007171.5E-152575IPR001005SANT/Myb domain
PfamPF002491.4E-162673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-222780IPR009057Homeodomain-like
CDDcd001671.28E-112873No hitNo description
PROSITE profilePS5129423.66574128IPR017930Myb domain
SMARTSM007173.6E-1578126IPR001005SANT/Myb domain
PfamPF002497.3E-1679122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-2481126IPR009057Homeodomain-like
CDDcd001672.12E-1181122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MKMMAVREQR EMSSEDESQV SGDLRRGPWS VEEDLLLVNY IAAHGEGQWN ALARCAGLKR  60
TGKSCRLRWL NYLRPDLRRG NFTAQEQLLI LELHSRWGNR WSRIAQHLPG RTDNEIKNYW  120
RTRVQKHARQ LNCDVNSQQF RDLVRYLWIP RLLERIHSSG SSSPPDVTPP SQLQQFHFNE  180
VELSYTAAAS SSSSVSTDGM QQQPPLVSQP EMVSAAEGNC WSTCTDNDNN NNDSMKKSST  240
SLRADTWCQP PNASTTECYN PAQYLGASET CWSSVVPADP FSTGVYAADM APFLPDLGET  300
MWGADDLWYT QIMGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24231264106B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794341e-124HF679434.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB28 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802225.11e-119transcription factor MYB2-like
TrEMBLA0A1E5VNG41e-125A0A1E5VNG4_9POAL; Transcription factor MYB108
STRINGSi030584m1e-114(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.11e-78myb domain protein 112