PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc01071.1.g00010.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 179aa MW: 20987.3 Da PI: 8.3623

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc01071.1.g00010.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00092	31	48	3	20
ETTTTEEESSHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHi 20 Cp C+k+F ++ ++ +H Zjn_sc01071.1.g00010.1.sm.mk 31 CPVCDKVFLDSGSFISHV 48 ****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04780	1.4E-9	13	83	IPR006865	Domain of unknown function DUF629
Pfam	PF04780	4.8E-6	88	160	IPR006865	Domain of unknown function DUF629

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MVHCRRSGSV HDLIDAVEFV KATGAWAYWL CPVCDKVFLD SGSFISHVEG EYIHEIQDFQ 60 PLMPKRVSLD AHEFYLSSRW TPFENGEEDK ERRKDLDKIR EAFTNFCTMK ALPARLVDKL 120 IKFARSKSKK PLPYCIPSCI TSLDQKELKR LMEPLNQLRE LLYKEWVYLR DLADKGKNK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791202.1	7e-73	uncharacterized protein LOC112872313
TrEMBL	A0A1E5WGI8	7e-74	A0A1E5WGI8_9POAL; Uncharacterized protein
STRING	Pavir.J33914.1.p	3e-73	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14897	2	2