PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc01244.1.g00010.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 212aa    MW: 23045.8 Da    PI: 6.3873
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc01244.1.g00010.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.92.3e-0930702359
                                  EEEEE-ST.T---EEEEEE...-SSSTTEEEEEEES--SS- CS
                          WRKY 23 sYYrCtsa.gCpvkkkver...saedpkvveitYegeHnhe 59
                                   YY+C    +Cp+kkkv++   s++d  ++e+tY ++H+++
  Zjn_sc01244.1.g00010.1.sm.mk 30 YYYKCNGDrRCPAKKKVQQqdgSSDDAPMFEVTYVNDHTCH 70
                                  5****9988********9833356899************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.7E-61571IPR003657WRKY domain
SuperFamilySSF1182903.14E-82970IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.0E-103071IPR003657WRKY domain
PfamPF031063.5E-103070IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
GTAVIRSLDQ HMTSKVVKLN LRRRRIKAPY YYKCNGDRRC PAKKKVQQQD GSSDDAPMFE  60
VTYVNDHTCH HVDDGSSQKS LPQTTTTGQQ RSGFEAAANR NSVALFDPLH RVGSAEENEA  120
IVSCLATVIS GTAPSSPGAE PVAPPVYLPQ SIAGASMVAD GAMAMLELDT GFSWDHPSSP  180
LCPAEVIMGF RDDVHMVDAA RFGDTVWPQY YT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972234.19e-38WRKY transcription factor WRKY62
TrEMBLK3XPF82e-36K3XPF8_SETIT; Uncharacterized protein
STRINGSi003782m3e-37(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632