PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc01683.1.g00010.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRF
Protein Properties Length: 163aa    MW: 18076.7 Da    PI: 9.7418
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc01683.1.g00010.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.31.2e-2281125145
                             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                     ++epgrCrRtDGKkWRC+r +++++k+C+rH+hrgr+r  + ++e
  Zjn_sc01683.1.g00010.1.am.mkhc  81 EPEPGRCRRTDGKKWRCWRSTIPNEKYCQRHMHRGRKRPVQLVVE 125
                                     69************************************9998875 PP
2QLQ53.95.5e-191550237
                             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                                     FTa+Qlq+L++Q  +y+y+aa++PvP +L+++i+k
  Zjn_sc01683.1.g00010.1.am.mkhc 15 LFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 50
                                    6**********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.0E-71450IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.6021550IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.3E-121649IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166721.79681125IPR014977WRC domain
PfamPF088792.2E-1982120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MKALIASIPD GAGALFTAMQ LQELEQQSRV YQYMAARVPV PTHLVFPIWK SVTGASFEGA  60
QKYPTLMGLA TLCLDFGKDP EPEPGRCRRT DGKKWRCWRS TIPNEKYCQR HMHRGRKRPV  120
QLVVEDDEPD SASGSKTTPG KADDKNASNK KLTVAARAAV EST
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800926.11e-109growth-regulating factor 11-like
SwissprotA5HEG91e-104GRF10_MAIZE; GRF-interacting factor 10
TrEMBLA0A2S3H2A31e-108A0A2S3H2A3_9POAL; Uncharacterized protein
TrEMBLA0A2T7EVY21e-108A0A2T7EVY2_9POAL; Uncharacterized protein
TrEMBLA0A3L6QSN31e-108A0A3L6QSN3_PANMI; Growth-regulating factor 11-like
TrEMBLA0A3L6T5041e-108A0A3L6T504_PANMI; Growth-regulating factor 11-like
STRINGPavir.Bb02610.1.p1e-109(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67353152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-31growth-regulating factor 5
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  3. Zhang D, et al.
    GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize.
    Plant Cell, 2018. 30(2): p. 360-374
    [PMID:29437990]