PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc02086.1.g00010.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 164aa    MW: 18667 Da    PI: 9.5264
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc02086.1.g00010.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.94.7e-10941272255
                                   SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                    +yp++e++ +LA+ +gL+ +q+ +WF N+R ++
  Zjn_sc02086.1.g00010.1.sm.mk  94 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 127
                                   59*****************************985 PP
2ELK34.35.2e-124768122
                           ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                                  ELK++Ll+KYsg+L+ L++EF+
  Zjn_sc02086.1.g00010.1.sm.mk 47 ELKEMLLKKYSGCLSRLRSEFL 68
                                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037896.1E-94768IPR005539ELK domain
SMARTSM011883.6E-64768IPR005539ELK domain
PROSITE profilePS5121310.4234767IPR005539ELK domain
PROSITE profilePS5007112.43867130IPR001356Homeobox domain
SMARTSM003895.3E-1469134IPR001356Homeobox domain
SuperFamilySSF466894.19E-2069139IPR009057Homeodomain-like
CDDcd000861.29E-1370131No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2773132IPR009057Homeodomain-like
PfamPF059201.9E-1787126IPR008422Homeobox KN domain
PROSITE patternPS000270105128IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
LKKGLWPPSY GLNYITAGSS EDEPYSGDTD ATELGQQEHS SRLADRELKE MLLKKYSGCL  60
SRLRSEFLKK RTKGKLPKDA RSALMDWWNT HYRWPYPTEE DKVRLAAMTG LDPKQINNWF  120
INQRKRHWKP SEDMRFALME GVTGGGGSSS GTTTLYFDTG TIGP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4571181e-133AF457118.1 Zea mays knotted1-like homeodomain protein liguleless4a (lg4a) mRNA, complete cds.
GenBankBT0852521e-133BT085252.1 Zea mays full-length cDNA clone ZM_BFb0343E20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020397912.11e-83liguleless 4 isoform X1
SwissprotA2Y0071e-83KNOSA_ORYSI; Homeobox protein knotted-1-like 10
SwissprotQ7GDL51e-83KNOSA_ORYSJ; Homeobox protein knotted-1-like 10
TrEMBLA0A0E0KY082e-83A0A0E0KY08_ORYPU; Uncharacterized protein
STRINGOPUNC05G01700.43e-84(Oryza punctata)
STRINGGRMZM2G094241_P018e-83(Zea mays)
STRINGLPERR05G01890.19e-83(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.27e-44KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  2. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  3. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  4. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  5. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  6. Chu H, et al.
    A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.
    J. Exp. Bot., 2013. 64(17): p. 5359-69
    [PMID:24043854]
  7. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  8. Coudert Y, et al.
    Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.
    New Phytol., 2015. 206(1): p. 243-54
    [PMID:25442012]
  9. Xu Y, et al.
    OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
    Plant J., 2015. 83(5): p. 806-17
    [PMID:26121094]
  10. Kir G, et al.
    RNA Interference Knockdown of BRASSINOSTEROID INSENSITIVE1 in Maize Reveals Novel Functions for Brassinosteroid Signaling in Controlling Plant Architecture.
    Plant Physiol., 2015. 169(1): p. 826-39
    [PMID:26162429]