PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc02090.1.g00010.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 189aa    MW: 20531.2 Da    PI: 4.5655
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc02090.1.g00010.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY48.22.1e-151201562359
                                   EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY  23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   +YYrC+  gC vkk+ver+++dp++v++tY g Hnh 
  Zjn_sc02090.1.g00010.1.sm.mk 120 NYYRCSADGCGVKKRVERDRDDPRYVITTYDGVHNHA 156
                                   8***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-1699158IPR003657WRKY domain
SuperFamilySSF1182903.14E-17103158IPR003657WRKY domain
PROSITE profilePS5081119.244106158IPR003657WRKY domain
SMARTSM007742.1E-16111157IPR003657WRKY domain
PfamPF031061.7E-10117155IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAASLGLNRE AEAFFNPCSA YSASSPFTTA SDYTASFPTS EPVDGTAFFA ELDDDRRLFD  60
FEYSPAAASI FAGNAGDRDD DNEKMRYAGD EKGARVNGRI GFRTRSEVEI LDDGFKWRKN  120
YYRCSADGCG VKKRVERDRD DPRYVITTYD GVHNHASPAA AIVQYGGDAG AQGFYSSPNS  180
GSPPAAASY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-1897159378Probable WRKY transcription factor 4
2lex_A4e-1897159378Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0852666e-40BT085266.2 Zea mays full-length cDNA clone ZM_BFb0348H08 mRNA, complete cds.
GenBankBT0864276e-40BT086427.1 Zea mays full-length cDNA clone ZM_BFc0165H01 mRNA, complete cds.
GenBankHQ8587736e-40HQ858773.1 Zea mays clone UT1759 WRKY transcription factor mRNA, partial cds.
GenBankKU0586096e-40KU058609.1 UNVERIFIED: Panicum miliaceum WRKY15-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440727.11e-62probable WRKY transcription factor 50
TrEMBLC5YU852e-61C5YU85_SORBI; Uncharacterized protein
STRINGSb09g005700.14e-62(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-30WRKY DNA-binding protein 50