PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc02187.1.g00020.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 155aa    MW: 17035.4 Da    PI: 6.2504
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc02187.1.g00020.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.3e-08631326
                                  S---SGGGGTS...--TTTTT-SS-SS CS
                       zf-CCCH  3 telCrffartG...tCkyGdrCkFaHg 26
                                   e+C++f+r      C++G+ C FaHg
  Zjn_sc02187.1.g00020.1.am.mk  6 GEPCPDFQR-RpgaACPRGNACAFAHG 31
                                  689*****9.558*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.873333IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5731IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-6735IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
RVSYTGEPCP DFQRRPGAAC PRGNACAFAH GTFELWLHPS RYRTRACRAG VSCCRRVCFF  60
AHTAAELRAA PKVEESPLSL SPKSTLASLW ESPPVSPVQG RRWIDAADEA DEMEDLMLAM  120
RELSFRKAAA SSAPVLPLVT EEDGPDLGWV SELVM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303637.11e-83zinc finger CCCH domain-containing protein 37-like
SwissprotQ65X922e-83C3H37_ORYSJ; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A1Z5R4P25e-82A0A1Z5R4P2_SORBI; Uncharacterized protein
STRINGORUFI05G24800.11e-81(Oryza rufipogon)
STRINGOS05T0525900-011e-81(Oryza sativa)
STRINGORGLA05G0205900.11e-81(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112091926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-25C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]