PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc02442.1.g00010.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 188aa    MW: 21070.3 Da    PI: 11.7124
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc02442.1.g00010.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.68.9e-10768166
                      trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66
                                  +Wt +e+laL++a++ +  +++r+ l  ++W++v+ +      ++++ qC++k e+l++r +  ++
  Zjn_sc02442.1.g00010.1.am.mk  7 CWTPDETLALVRAYTARRLAVGREHLTSADWAAVATAAP----SKTARQCRHKVEKLRRRLRSSRR 68
                                  8*********************************99865....689**************998765 PP
2Myb_DNA-binding21.74.7e-07759347
                                  SS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.........tWktIartmgkgRtlkqcksrwqky 47
                                   WT++E + lv+a +              +W+++a   +  +t+ qc+++  k+
  Zjn_sc02442.1.g00010.1.am.mk  7 CWTPDETLALVRAYTARRLAvgrehltsaDWAAVATAAP-SKTARQCRHKVEKL 59
                                  6************99877668899***************.*********98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.24E-5558IPR009057Homeodomain-like
PfamPF138375.7E-8668No hitNo description
Gene3DG3DSA:1.10.10.609.7E-5861IPR009057Homeodomain-like
PROSITE profilePS500906.504860IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
RRVPPPCWTP DETLALVRAY TARRLAVGRE HLTSADWAAV ATAAPSKTAR QCRHKVEKLR  60
RRLRSSRRRP CPLLDAIDLL DGPSPPIMSR VQSPSPSRSP SPPPAVSLPS PCSPPASPPR  120
KRRRDDYGVS DLVGALRAIG EGFLRAEERR MEAARETQRM RMDMALRHLD AQRRLMEVFT  180
GRIVDALD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15763KLRRRLR
25864LRRRLRS
3119123RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144478.13e-77uncharacterized protein LOC100277445
TrEMBLB6TUK07e-76B6TUK0_MAIZE; FRIGIDA interacting protein 2
STRINGGRMZM2G320827_P011e-76(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139112024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-06Trihelix family protein