PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc02644.1.g00010.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 260aa    MW: 28149.4 Da    PI: 6.5201
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc02644.1.g00010.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.28.6e-2582177183
                                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHH CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeF 68 
                                   f+k+ tpsdv++++rlv+pk +ae+h        + + + ++ l +ed +      ++W+++++y+ +s++yvlt+GW++F
  Zjn_sc02644.1.g00010.1.am.mk  82 FEKAVTPSDVGRLNRLVVPKVHAEKHfpplsekdDDDDAAPVLLAFEDADPnggngKVWRFRFSYWSSSQSYVLTRGWSRF 162
                                   89****************************99996667899999999965455888************************* PP

                                   HHHHT--TT-EEEEE CS
                            B3  69 vkangLkegDfvvFk 83 
                                   v+++gL +gD+++F+
  Zjn_sc02644.1.g00010.1.am.mk 163 VREKGLAAGDTITFS 177
                                   **************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.545125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-6225IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.1E-3374179IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-2777178IPR015300DNA-binding pseudobarrel domain
CDDcd100175.91E-2580176No hitNo description
PROSITE profilePS5086312.61982190IPR003340B3 DNA binding domain
SMARTSM010191.7E-1582191IPR003340B3 DNA binding domain
PfamPF023621.5E-2182177IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
EEAAARAFDV AARRFRGHDA AVNFPGPADA DELAFLAVRP KAEVVDMLRK HTYNDELRQG  60
LRSVSGGGGV CEADPVPRTP LFEKAVTPSD VGRLNRLVVP KVHAEKHFPP LSEKDDDDDA  120
APVLLAFEDA DPNGGNGKVW RFRFSYWSSS QSYVLTRGWS RFVREKGLAA GDTITFSQAA  180
TPPTPTTTSA DGEAYTARRL FIECRKRKRT RTDSDGSVVV DGCPDHGGDA RVVRLFGANI  240
AAAIGGHAFV EVEPQLQVGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-388117913103DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806570.14e-93AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS73e-65Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A2T7E8E65e-97A0A2T7E8E6_9POAL; Uncharacterized protein
STRINGSb09g004140.11e-74(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.14e-54related to ABI3/VP1 1