PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc02689.1.g00010.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 172aa    MW: 18767 Da    PI: 7.7045
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc02689.1.g00010.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA81.31.6e-251464158
                       CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                                    d+p+YVNaKQy+ Il+RR +Rak+e+e++l      pylheSRh hAlrR+RgsgGrF
  Zjn_sc02689.1.g00010.1.sm.mkhc 14 DAPIYVNAKQYEVILRRR-ARAKAEKENRL------PYLHESRHLHALRRARGSGGRF 64
                                    68*************998.59*********......*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.6E-261267IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115223.8541367IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.5E-211664IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
SGGRMLVPLN MPADAPIYVN AKQYEVILRR RARAKAEKEN RLPYLHESRH LHALRRARGS  60
GGRFLNTKKE ANGKDAGAGG KTTLSNPLML QTASPGSEIQ QSELGNLSSV SSFSGSEVSS  120
MYDHEDVDHY HSFDQLRTPF TPLPSLMDGE HGVGNPFKWA AASEGCCDLL EA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-141470264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577268.19e-78nuclear transcription factor Y subunit A-2 isoform X1
RefseqXP_010237001.19e-78nuclear transcription factor Y subunit A-2 isoform X1
RefseqXP_024310184.19e-78nuclear transcription factor Y subunit A-2 isoform X1
RefseqXP_024310185.15e-78nuclear transcription factor Y subunit A-2 isoform X2
TrEMBLA0A0A9CZS63e-92A0A0A9CZS6_ARUDO; Uncharacterized protein
STRINGEMT290227e-78(Aegilops tauschii)
STRINGPavir.Cb00052.1.p2e-78(Panicum virgatum)
STRINGTRIUR3_28596-P19e-78(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.13e-20nuclear factor Y, subunit A6