PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc03390.1.g00010.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GeBP
Protein Properties Length: 325aa    MW: 35798.2 Da    PI: 9.7663
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc03390.1.g00010.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57393.62.1e-2970167297
                        DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsf 80 
                                   +++rlws+ De+v+L+Gl  ++ak+g+   ++ di++++  + + +s+kvs++ql++K+rrLK+K+++  +++k+g+ep+f
  Zjn_sc03390.1.g00010.1.am.mk  70 RPSRLWSQGDELVILRGLAAYRAKHGAlpGSMYDISKLHGNIGEVLSVKVSTTQLSDKVRRLKQKYHQLATRTKNGREPDF 150
                                   679************************666677************************************************ PP

                        DUF573  81 skehdqkifelskkiWg 97 
                                    +++d++++el kk+Wg
  Zjn_sc03390.1.g00010.1.am.mk 151 PTSQDHSVYELGKKVWG 167
                                   ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-2672167IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
SDADPAAGHG ADSEDGNASP LPSRAEAAAI KPLSSRPMDP PRRSAPSFSE SRPKRPRSAA  60
IPAVMEHLKR PSRLWSQGDE LVILRGLAAY RAKHGALPGS MYDISKLHGN IGEVLSVKVS  120
TTQLSDKVRR LKQKYHQLAT RTKNGREPDF PTSQDHSVYE LGKKVWGAIG SAGADADAGG  180
GGAIVEHENT DGLHSEEEHQ SGESDGDMDI WRDDHDRKNK RVKPISMANG NGTRFGAMSS  240
SRRGKAEFEK GKDAYPYLWE TVEELSRQHP NGVAFKKAFE MIEGAKARGM EEKLRKFRVA  300
EVRHQLRRME LMKETVKMVL DALEG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0398014e-64BT039801.1 Zea mays full-length cDNA clone ZM_BFc0045M21 mRNA, complete cds.
GenBankBT0410094e-64BT041009.1 Zea mays full-length cDNA clone ZM_BFc0166A12 mRNA, complete cds.
GenBankEU9681864e-64EU968186.1 Zea mays clone 316365 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460312.11e-154STOREKEEPER protein
TrEMBLC5X2781e-153C5X278_SORBI; Uncharacterized protein
STRINGSb02g026310.11e-154(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.13e-14DNA-binding storekeeper protein-related transcriptional regulator