PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc03432.1.g00010.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 197aa MW: 21657.9 Da PI: 10.4148

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc03432.1.g00010.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.4	1e-31	19	123	1	94
EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 f+k+ tpsdv+k++rlv+pk++ae+h + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv++ Zjn_sc03432.1.g00010.1.am.mk 19 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrapeaaAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVRE 99 89***********************9998887775555699********************************** PP HT--TT-EEEEEE-SS.SEE..EE CS B3 72 ngLkegDfvvFkldgr.sefelvv 94 +gL++gD++vF+++ +e++l++ Zjn_sc03432.1.g00010.1.am.mk 100 KGLRAGDTIVFSHSTYgEEKQLFI 123 **********986656666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.3E-40	15	131	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.62E-31	16	127	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.13E-30	17	113	No hit	No description
SMART	SM01019	7.5E-24	19	128	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.184	19	129	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.4E-29	19	124	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
GGAGVRAQPT PAWARAPLFE KAVTPSDVGK LNRLVVPKQH AEKHFPLKRA PEAAAAATGK 60 GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVREK GLRAGDTIVF SHSTYGEEKQ 120 LFIDCKKTST TEPAVPSPVE KSKETRVAVR LFGVDIAGDV CQKRGRPLEM ALEQGKPFLK 180 KQCVVPHQSP ALGAILL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	5e-51	18	138	13	127	DNA-binding protein RAV1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004968155.1	1e-111	AP2/ERF and B3 domain-containing protein Os01g0141000
Swissprot	Q9AWS0	3e-89	Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBL	K3XJ36	1e-109	K3XJ36_SETIT; Uncharacterized protein
STRING	Si001909m	1e-110	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP456	38	203

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-54	related to ABI3/VP1 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]