PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc04028.1.g00020.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 66aa MW: 7394.65 Da PI: 11.5047

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc04028.1.g00020.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.7	2.3e-26	12	61	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl ++s Zjn_sc04028.1.g00020.1.sm.mk 12 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLSHFAS 61 89********************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	26.114	3	63	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.2E-32	3	62	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	5	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.41E-25	5	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-24	5	25	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.9E-25	12	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-24	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-24	40	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
MAGKRERMAI RRIDNLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLVVF SATGKLSHFA 60 SSRIEA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ009259	1e-75	FJ009259.1 Saccharum officinarum MADS box protein mRNA, complete cds.
GenBank	FJ608826	1e-75	FJ608826.1 Saccharum arundinaceum MADS box transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793840.1	2e-34	MADS-box transcription factor 47-like isoform X1
Refseq	XP_025793841.1	2e-34	MADS-box transcription factor 47-like isoform X1
Refseq	XP_025793842.1	2e-34	MADS-box transcription factor 47-like isoform X1
Refseq	XP_025793844.1	2e-34	MADS-box transcription factor 47-like isoform X2
Swissprot	Q5K4R0	3e-33	MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBL	A0A1E5VFN4	2e-33	A0A1E5VFN4_9POAL; MADS-box transcription factor 47
TrEMBL	A0A3L6SC43	3e-33	A0A3L6SC43_PANMI; Uncharacterized protein
STRING	Pavir.Ia04527.1.p	5e-34	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	1e-27	AGAMOUS-like 24

Publications ? help Back to Top
Lee S,Choi SC,An G Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses. Plant J., 2008. 54(1): p. 93-105 [PMID:18182025] Lee S,Jeong DH,An G A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses. Plant Signal Behav, 2008. 3(7): p. 471-4 [PMID:19704489]