PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc07224.1.g00010.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17048.5 Da    PI: 9.3314
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc07224.1.g00010.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.91.1e-121311545
                                  HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                        SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgk 45
                                  kR+ gi+KKA+E+   Cda+vav+ifs+ gk
  Zjn_sc07224.1.g00010.1.am.mk  1 KRKSGIFKKASEIILRCDARVAVVIFSKAGK 31
                                  9***************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.124139IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-13145IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-8116IPR002100Transcription factor, MADS-box
PfamPF003191.7E-12133IPR002100Transcription factor, MADS-box
SMARTSM004320.0011138IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-81637IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
KRKSGIFKKA SEIILRCDAR VAVVIFSKAG KPYALGSPSV DDVLRLVDVH EDGAPAQQLS  60
SDVVCERGVP AQQVTAVAER AAAEAMVRQH EDTKALVAAE QLRVRTVGDR VMQAAAGRRF  120
WWGADVEKLG AAELPEFTRA LQQLRDNLHR HIERV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811768.13e-42agamous-like MADS-box protein AGL62
TrEMBLA0A1E5UM653e-39A0A1E5UM65_9POAL; Uncharacterized protein
TrEMBLA0A2S3HIR96e-41A0A2S3HIR9_9POAL; Uncharacterized protein
TrEMBLA0A2T7DXP16e-41A0A2T7DXP1_9POAL; Uncharacterized protein
STRINGPavir.J16245.1.p5e-39(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-15AGAMOUS-like 61