PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc07956.1.g00010.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 91aa MW: 10280.9 Da PI: 11.067

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc07956.1.g00010.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.6	6.9e-09	58	90	1	32
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32 +g+W++eEd l+++++++G+g +W + ++++g Zjn_sc07956.1.g00010.1.am.mk 58 KGPWSPEEDAMLKNYIEKHGTGgNWIALPHKIG 90 79***********************99988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.4E-11	49	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.41E-7	52	88	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.327	53	91	IPR017930	Myb domain
Pfam	PF00249	2.4E-7	58	90	IPR001005	SANT/Myb domain
CDD	cd00167	1.24E-5	60	88	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MGAGGHPTPC PPNQTHHHST AQSRLPEKRP PRRRERREKK RKTKMGRAPC CDKATVKKGP 60 WSPEEDAMLK NYIEKHGTGG NWIALPHKIG K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	41	RREKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ354542	9e-56	GQ354542.1 Spartina pectinata microsatellite SPSD003 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973097.1	6e-26	transcription factor MYB36
Swissprot	Q9SJL7	1e-22	RAX2_ARATH; Transcription factor RAX2
TrEMBL	A0A426ZFK4	9e-26	A0A426ZFK4_ENSVE; Uncharacterized protein
TrEMBL	K3YMV2	1e-24	K3YMV2_SETIT; Uncharacterized protein
STRING	Si015585m	2e-25	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP135	38	412

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	5e-25	MYB family protein

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700]