PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc08321.1.g00010.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 234aa MW: 25788.6 Da PI: 7.0094

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc08321.1.g00010.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	214.9	4.2e-66	19	234	80	298
GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdi....sqGlQWpaLlqaLasRpegpp.slRiTgvgspesgsk 155 al l +e++P+l+f+h +aN Ilea+ege+ vH++D+++ ++G QW Ll+ L +R++g+p ++RiTgvg+ Zjn_sc08321.1.g00010.1.am.mk 19 ALALAYELCPYLRFAHYVANASILEAFEGESNVHVVDLGMtlglEHGHQWRRLLDGLKNRAGGKPaRVRITGVGA----PL 95 556779*****************************97622226889*********77666*****....99 PP GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236 ++++++g+ L+ +A++lgv +ef++ v ++le+l++++L v+ +Ea+a+n++l+lh +++es + +vL+++++lsP Zjn_sc08321.1.g00010.1.am.mk 96 DTMKAVGRELEAYAATLGVFLEFRA-VDRSLESLHIDDLGVRGDEAVAINSILELHCVVKESRGALN---SVLQTIRKLSP 172 *********************.799**************************88877777...8****** PP GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 k +v+veq+a hn++ Fl rf+eal+yy+alfd+l+a lpr + r+ vE++ +g ei+nvv Zjn_sc08321.1.g00010.1.am.mk 173 KAFVLVEQDAGHNGPFFLGRFMEALHYYAALFDALDAALPRYDARRARVEQFHFGAEIRNVV 234 **********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.779	1	234	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-63	19	234	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MAFCIPRLCA GRDGTRGEAL ALAYELCPYL RFAHYVANAS ILEAFEGESN VHVVDLGMTL 60 GLEHGHQWRR LLDGLKNRAG GKPARVRITG VGAPLDTMKA VGRELEAYAA TLGVFLEFRA 120 VDRSLESLHI DDLGVRGDEA VAINSILELH CVVKESRGAL NSVLQTIRKL SPKAFVLVEQ 180 DAGHNGPFFL GRFMEALHYY AALFDALDAA LPRYDARRAR VEQFHFGAEI RNVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-41	27	234	87	296	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003791	0.0	AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBank	AP006757	0.0	AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814052.1	1e-148	DELLA protein RGL1-like
TrEMBL	A0A2S3HNZ9	1e-147	A0A2S3HNZ9_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DCV4	1e-147	A0A2T7DCV4_9POAL; Uncharacterized protein
STRING	Si000959m	1e-146	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5640	33	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	3e-38	RGA-like 1