PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc10146.1.g00010.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 75aa    MW: 8545.79 Da    PI: 9.9493
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc10146.1.g00010.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS71.71.3e-22174300374
                          GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   cega+r+erhe++ +Wr+r+++aGF++ p++  +a++a+  l+k++ + gy+v ee+g+lvlgWk++ ++++S+W+
  Zjn_sc10146.1.g00010.1.am.mk   1 CEGAARVERHERADQWRRRMSRAGFQSTPIR--MATKAREWLEKHAdGGGYTVAEEKGCLVLGWKGKHVIATSCWK 74 
                                   9****************************96..67899*******98899*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.803155IPR005202Transcription factor GRAS
PfamPF035144.7E-20174IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
CEGAARVERH ERADQWRRRM SRAGFQSTPI RMATKAREWL EKHADGGGYT VAEEKGCLVL  60
GWKGKHVIAT SCWKC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3670292e-74AK367029.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2050E06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676175.24e-40DELLA protein RGL3
RefseqXP_015690691.19e-41PREDICTED: uncharacterized protein LOC107303918
RefseqXP_025814052.14e-40DELLA protein RGL1-like
TrEMBLA0A0D9YIT13e-40A0A0D9YIT1_9ORYZ; Uncharacterized protein
STRINGPavir.J09064.1.p4e-42(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-18RGA-like 1