PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc10282.1.g00010.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 103aa    MW: 10980.3 Da    PI: 10.0273
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc10282.1.g00010.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS31.32.6e-10369108173
                          GRAS 108 geervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelg 173
                                    ++++H +Dfd+s + Q +aL q La  p+   sl++T++ +p+s     ++ +l +++erL+k+A+++g
  Zjn_sc10282.1.g00010.1.sm.mk   3 DHRAIHLVDFDVSAP-QHAALVQYLAGVPG--TSLKVTAITDPTSPfaqsQTATLPAVEERLKKLADRVG 69 
                                   5689********987.99********9655..59********998889999999************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.4241103IPR005202Transcription factor GRAS
PfamPF035149.0E-8369IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
VGDHRAIHLV DFDVSAPQHA ALVQYLAGVP GTSLKVTAIT DPTSPFAQSQ TATLPAVEER  60
LKKLADRVGN AGLDDGGSQG RGRRELLQHP CSAQSQKGTR RQR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008668998.12e-28scarecrow-like protein 8
TrEMBLA0A060CY615e-27A0A060CY61_MAIZE; GRAS transcription factor (Fragment)
STRINGGRMZM2G109869_P018e-28(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2492236