PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc13092.1.g00020.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 342aa    MW: 36961.3 Da    PI: 6.8601
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc13092.1.g00020.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.2e-2089148357
                                   --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                   +R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Zjn_sc13092.1.g00020.1.am.mk  89 TRWCPTPEQLMVLEEMYRGgMRTPTASQIQQITAHLadygRIEGKNVFYWFQNHKARDRQ 148
                                   8*****************99*************************************996 PP
2Wus_type_Homeobox118.72.6e-3888149364
             Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                   +tRW+PtpeQ+++Lee+y+ G+rtP++++iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk
  Zjn_sc13092.1.g00020.1.am.mk  88 STRWCPTPEQLMVLEEMYRGGMRTPTASQIQQITAHLADYGRIEGKNVFYWFQNHKARDRQK 149
                                   79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.0E-486153IPR001356Homeobox domain
SuperFamilySSF466897.89E-1187152IPR009057Homeodomain-like
PfamPF000464.9E-1889148IPR001356Homeobox domain
CDDcd000862.89E-589149No hitNo description
Gene3DG3DSA:1.10.10.602.9E-790148IPR009057Homeodomain-like
PROSITE profilePS5007110.10694149IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MTCLSYAEAG RHDDPFCLSA QLHSTNQEPQ TNQLTAHHPR QLQADRSLSI ISSYALYVAR  60
VYSLEEEDDF MPSQQGGQQQ RQVPTMGSTR WCPTPEQLMV LEEMYRGGMR TPTASQIQQI  120
TAHLADYGRI EGKNVFYWFQ NHKARDRQKL RRRLCMSHHR HFLTCSAQYY AATATHHHHG  180
HGFPATMPVA PAYGCGGGGV FDQPAGAAGV QLLAPTSPSP AAAAAYGYYY PAATTFAAAP  240
TVRCAGDGGT TPPSPNQLFN YHQDGGGVAL APVEALGRPG HSLGKLADNF GVSTTLDDGV  300
EVGPPGFEGS LPSPLTTALC RPLKTLDLFP GGLKEEQQHD VA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401841e-88BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds.
GenBankKJ7269461e-88KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809937.13e-84putative WUSCHEL-related homeobox 2
SwissprotA2XZR31e-57WOX2_ORYSI; Putative WUSCHEL-related homeobox 2
TrEMBLA0A1E5VXX16e-94A0A1E5VXX1_9POAL; Putative WUSCHEL-related homeobox 2
STRINGPavir.J22602.1.p6e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.14e-39WOX family protein