PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00004.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 187aa MW: 19542.4 Da PI: 7.8826

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00004.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95	8.2e-30	2	105	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l a+p ++r+++++sl+yeA+ r+ +Pv+ Zmw_sc00004.1.g00090.1.sm.mkhc 2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLGAVPLQHRPALFRSLLYEACGRTINPVS 80 6*******************9999888899******************************************* PP DUF260 75 Gavgvilklqqqleqlkaelallke 99 Ga+g++++++++l+q++ae++l++e Zmw_sc00004.1.g00090.1.sm.mkhc 81 GAIGLMWTGNWDLCQAAAEAVLRGE 105 *****************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.899	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.7E-24	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLGAVPLQHR 60 PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAAEA VLRGESLRAL SAIPAAFTDR 120 DMAGLYGNVG VAASSSPEHS SSTPSRKREN CGRFLAGTDD CQPPAGLLLQ PCELHLCLTP 180 ASLPAGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020177395.1	5e-97	LOB domain-containing protein 39-like
Swissprot	Q9FN11	2e-54	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A3B6JFF0	1e-95	A0A3B6JFF0_WHEAT; Uncharacterized protein
TrEMBL	A0A453HER9	1e-95	A0A453HER9_AEGTS; Uncharacterized protein
STRING	Traes_4DS_9575221BB.3	2e-96	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8450	30	41

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]